Variant report

Variant	rs35401795
Chromosome Location	chr3:105093627-105093628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105085642..105088173-chr3:105091150..105094093,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170017	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13060146	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13064201	0.84[EUR][1000 genomes]
rs13068958	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079517	0.90[AFR][1000 genomes]
rs13095298	0.84[EUR][1000 genomes]
rs1438548	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438549	0.90[AFR][1000 genomes]
rs1438551	0.90[AFR][1000 genomes]
rs16851097	0.88[AFR][1000 genomes]
rs1898656	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2399048	0.89[EUR][1000 genomes]
rs66892237	0.81[ASN][1000 genomes]
rs7636841	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7652866	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35401795	OSBPL7	trans	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105089000-105107000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:105089200-105094000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:105089200-105095200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:105089200-105101800	Weak transcription	NHDF-Ad	bronchial
5	chr3:105089400-105094200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:105089600-105095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:105089800-105094000	Weak transcription	Dnd41	blood
8	chr3:105089800-105095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:105090200-105096400	Weak transcription	A549	lung
10	chr3:105090600-105094000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:105090600-105101800	Weak transcription	Osteobl	bone
12	chr3:105090800-105094400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:105090800-105104800	Weak transcription	NHLF	lung
14	chr3:105091000-105097600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:105091400-105105000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:105091600-105095200	Weak transcription	Brain Angular Gyrus	brain
17	chr3:105091600-105095600	Weak transcription	HUVEC	blood vessel
18	chr3:105091600-105097400	Weak transcription	Brain Anterior Caudate	brain
19	chr3:105091600-105104000	Weak transcription	NH-A	brain
20	chr3:105091800-105104600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:105091800-105104800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:105092000-105097600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:105092000-105106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:105092400-105096400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:105092600-105094800	Weak transcription	Brain Substantia Nigra	brain
26	chr3:105092600-105095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:105092800-105094800	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:105092800-105100200	Weak transcription	NHEK	skin
29	chr3:105092800-105103600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:105092800-105104200	Weak transcription	HepG2	liver
31	chr3:105092800-105105200	Weak transcription	HMEC	breast
32	chr3:105093000-105093800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:105093200-105103800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:105093600-105094400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr3:105093600-105095600	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr3:105093600-105096200	ZNF genes & repeats	GM12878-XiMat	blood

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