Variant report

Variant	rs35402486
Chromosome Location	chr2:10803788-10803789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10799527..10801585-chr2:10803268..10805336,2	MCF-7	breast:
2	chr2:10587820..10590714-chr2:10801599..10805068,3	MCF-7	breast:
3	chr2:10802211..10805058-chr2:10805711..10808326,2	K562	blood:
4	chr2:10585145..10589357-chr2:10803647..10807943,5	K562	blood:
5	chr2:10584192..10588618-chr2:10803000..10809655,7	K562	blood:

Variant related genes	Relation type
ENSG00000257135	Chromatin interaction
ENSG00000206633	Chromatin interaction
ENSG00000115758	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13015561	1.00[AFR][1000 genomes]
rs13017433	1.00[AFR][1000 genomes]
rs2110777	1.00[AFR][1000 genomes]
rs35841482	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10756200-10828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10772200-10808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:10779600-10808400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr2:10782200-10808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:10786400-10809200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:10786600-10808400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr2:10787000-10808800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:10787400-10808400	Strong transcription	Placenta	Placenta
9	chr2:10787400-10808400	Strong transcription	Fetal Stomach	stomach
10	chr2:10788000-10827400	Weak transcription	Fetal Brain Male	brain
11	chr2:10788400-10828000	Weak transcription	Fetal Heart	heart
12	chr2:10789000-10820600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:10789400-10807800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:10789400-10808400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:10790000-10808400	Strong transcription	Fetal Thymus	thymus
16	chr2:10791600-10808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:10792800-10808200	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:10793800-10828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:10794000-10823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:10794200-10817200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:10794600-10828200	Weak transcription	Stomach Mucosa	stomach
22	chr2:10794600-10828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:10794800-10804600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:10795000-10806800	Strong transcription	Thymus	Thymus
25	chr2:10795200-10828800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:10795400-10804600	Weak transcription	Spleen	Spleen
27	chr2:10795600-10808200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:10796000-10808400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr2:10796200-10806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:10796200-10807400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr2:10796600-10808800	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:10796800-10804000	Weak transcription	Small Intestine	intestine
33	chr2:10796800-10804600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr2:10796800-10808400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:10797400-10823600	Weak transcription	Psoas Muscle	Psoas
36	chr2:10798000-10804200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:10798200-10806800	Strong transcription	Fetal Intestine Small	intestine
38	chr2:10799200-10804000	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:10799200-10804400	Weak transcription	Gastric	stomach
40	chr2:10799200-10806400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:10799200-10815400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr2:10799200-10826000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:10799400-10804400	Weak transcription	Brain Substantia Nigra	brain
44	chr2:10799400-10804600	Weak transcription	Aorta	Aorta
45	chr2:10799400-10804600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr2:10799400-10807000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr2:10799400-10823200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr2:10799600-10804200	Weak transcription	Right Ventricle	heart
49	chr2:10799600-10804400	Weak transcription	Esophagus	oesophagus
50	chr2:10799600-10805800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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