Variant report

Variant	rs35403677
Chromosome Location	chr17:33668795-33668796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:62)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:62 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL11A	chr17:33668612-33668946	GM12878	blood:	n/a	n/a
2	STAT5A	chr17:33668432-33668957	GM12878	blood:	n/a	n/a
3	EP300	chr17:33668202-33669130	GM12878	blood:	n/a	n/a
4	NFATC1	chr17:33668560-33669043	GM12878	blood:	n/a	n/a
5	IRF4	chr17:33668455-33669072	GM12878	blood:	n/a	n/a
6	TCF12	chr17:33668692-33668966	GM12878	blood:	n/a	n/a
7	TBL1XR1	chr17:33668686-33669002	GM12878	blood:	n/a	n/a
8	RCOR1	chr17:33668681-33669110	GM12878	blood:	n/a	n/a
9	BATF	chr17:33668595-33669032	GM12878	blood:	n/a	n/a
10	REST	chr17:33668697-33668940	Hela-S3	cervix:	n/a	n/a
11	POU2F2	chr17:33668086-33669027	GM12878	blood:	n/a	n/a
12	PAX5	chr17:33668701-33668931	GM12878	blood:	n/a	n/a
13	CUX1	chr17:33668689-33669009	GM12878	blood:	n/a	n/a
14	SPI1	chr17:33668623-33668967	GM12878	blood:	n/a	n/a
15	PML	chr17:33668556-33669098	GM12878	blood:	n/a	n/a
16	BCLAF1	chr17:33668581-33669130	GM12878	blood:	n/a	n/a
17	FOXM1	chr17:33668517-33669036	GM12878	blood:	n/a	n/a
18	SPI1	chr17:33668595-33669024	GM12878	blood:	n/a	n/a
19	NFIC	chr17:33668490-33669114	GM12878	blood:	n/a	n/a
20	TCF3	chr17:33668649-33669021	GM12878	blood:	n/a	n/a
21	POU2F2	chr17:33668530-33669059	GM12891	blood:	n/a	n/a
22	EP300	chr17:33668629-33668965	GM12878	blood:	n/a	n/a
23	EP300	chr17:33668641-33669004	GM12878	blood:	n/a	n/a
24	TCF12	chr17:33668657-33668941	GM12878	blood:	n/a	n/a
25	TCF3	chr17:33668754-33668897	GM12878	blood:	n/a	n/a
26	SP1	chr17:33668616-33668960	GM12878	blood:	n/a	n/a
27	IRF4	chr17:33668472-33669121	GM12878	blood:	n/a	n/a
28	MTA3	chr17:33668454-33669045	GM12878	blood:	n/a	n/a
29	BHLHE40	chr17:33668628-33669113	GM12878	blood:	n/a	n/a
30	BCL11A	chr17:33668550-33669051	GM12878	blood:	n/a	n/a
31	EBF1	chr17:33668605-33668956	GM12878	blood:	n/a	n/a
32	ATF2	chr17:33668688-33669050	GM12878	blood:	n/a	n/a
33	SP1	chr17:33668671-33668961	GM12878	blood:	n/a	n/a
34	SPI1	chr17:33668158-33669323	GM12878	blood:	n/a	n/a
35	RUNX3	chr17:33668360-33669030	GM12878	blood:	n/a	n/a
36	RUNX3	chr17:33668393-33669117	GM12878	blood:	n/a	n/a
37	POU2F2	chr17:33668720-33668877	GM12878	blood:	n/a	n/a
38	SPI1	chr17:33668427-33669014	GM12891	blood:	n/a	n/a
39	STAT5A	chr17:33668694-33669029	GM12878	blood:	n/a	n/a
40	POLR2A	chr17:33668617-33668966	GM12891	blood:	n/a	n/a
41	EBF1	chr17:33668615-33669008	GM12878	blood:	n/a	n/a
42	EP300	chr17:33668727-33668940	GM12878	blood:	n/a	n/a
43	MTA3	chr17:33668509-33669087	GM12878	blood:	n/a	n/a
44	MEF2C	chr17:33668600-33669122	GM12878	blood:	n/a	n/a
45	SPI1	chr17:33668450-33669061	GM12891	blood:	n/a	n/a
46	MEF2A	chr17:33668562-33669066	GM12878	blood:	n/a	n/a
47	PAX5	chr17:33668579-33668908	GM12878	blood:	n/a	n/a
48	FOXM1	chr17:33668495-33669154	GM12878	blood:	n/a	n/a
49	ATF2	chr17:33668590-33669116	GM12878	blood:	n/a	n/a
50	IKZF1	chr17:33668512-33668987	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000267271	TF binding region

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1074218	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650920	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651245	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651319	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652130	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653398	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11653436	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656369	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656611	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656615	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657050	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11657485	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657727	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12944610	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12945434	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12949518	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1913545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949262	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1961422	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34061053	0.93[ASN][1000 genomes]
rs34067675	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34428859	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34600319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34658850	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34809170	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35077171	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35225019	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35240455	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36023402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55818105	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55832182	0.93[ASN][1000 genomes]
rs55976095	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61532107	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505453	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505455	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505456	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505465	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381430	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207589	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209179	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211292	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211779	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212097	0.93[ASN][1000 genomes]
rs7212155	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212335	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218056	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219082	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219880	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222533	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222750	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223251	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7223904	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224028	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224555	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081294	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747499	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv457725	chr17:33664044-33774159	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv574743	chr17:33664044-33774159	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv515566	chr17:33664818-33768199	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33653000-33671200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:33668000-33668800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:33668000-33669400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr17:33668000-33670000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
5	chr17:33668000-33670800	Enhancers	Primary B cells from cord blood	blood
6	chr17:33668000-33672400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr17:33668200-33670000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:33668200-33670400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:33668400-33668800	Flanking Active TSS	GM12878-XiMat	blood
10	chr17:33668400-33669000	Active TSS	Monocytes-CD14+_RO01746	blood
11	chr17:33668400-33669600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr17:33668400-33669800	Enhancers	Dnd41	blood
13	chr17:33668400-33670000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr17:33668400-33670200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr17:33668600-33669200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr17:33668600-33669200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr17:33668600-33669200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr17:33668600-33669800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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