Variant report

Variant	rs35407025
Chromosome Location	chr3:118831276-118831277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10934483	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11550908	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11926466	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12629682	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12629689	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12635003	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12635029	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13065731	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13069460	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13080735	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13082731	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087937	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1369574	0.95[ASN][1000 genomes]
rs16829389	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2082840	0.91[ASN][1000 genomes]
rs35726529	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41271385	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4314164	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4327384	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4420859	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687972	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687977	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56183373	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66470862	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67743854	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv2756586	chr3:118688611-118863998	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1003880	chr3:118729532-118858123	Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763752	chr3:118730933-118834142	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1003674	chr3:118733110-118834142	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1012957	chr3:118770040-118834142	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118831200-118833000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:118831200-118833200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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