Variant report

Variant	rs35407153
Chromosome Location	chr2:99164999-99165000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:99157396..99159729-chr2:99164659..99167537,2	MCF-7	breast:
2	chr2:99160013..99162321-chr2:99164839..99166505,3	K562	blood:
3	chr2:99160013..99163753-chr2:99164839..99167282,4	K562	blood:
4	chr2:99163326..99165572-chr2:99223731..99226642,2	MCF-7	breast:
5	chr2:99163397..99166242-chr2:99172917..99175701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183513	Chromatin interaction
ENSG00000115446	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13011320	0.85[AMR][1000 genomes]
rs6734569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6751088	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013941	chr2:99116255-99317933	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv535834	chr2:99116255-99317933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99127000-99176800	Weak transcription	Right Atrium	heart
2	chr2:99133000-99176400	Weak transcription	Psoas Muscle	Psoas
3	chr2:99134400-99169400	Weak transcription	NHLF	lung
4	chr2:99136400-99185400	Weak transcription	Hela-S3	cervix
5	chr2:99141200-99172200	Weak transcription	Stomach Mucosa	stomach
6	chr2:99147200-99200200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:99148400-99211200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:99149000-99209800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:99149000-99210800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:99149200-99210800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:99149400-99166800	Strong transcription	Aorta	Aorta
12	chr2:99149600-99176200	Strong transcription	Fetal Stomach	stomach
13	chr2:99150800-99169200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:99151000-99165400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:99152200-99166000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:99152200-99167200	Strong transcription	Brain Germinal Matrix	brain
17	chr2:99152200-99170600	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:99152200-99171000	Strong transcription	Left Ventricle	heart
19	chr2:99152200-99174600	Strong transcription	Stomach Smooth Muscle	stomach
20	chr2:99152200-99177400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:99152400-99174400	Strong transcription	Fetal Brain Female	brain
22	chr2:99153400-99169400	Weak transcription	HSMM	muscle
23	chr2:99153600-99167400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:99153600-99178600	Strong transcription	Fetal Intestine Large	intestine
25	chr2:99153800-99165000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:99154600-99166400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:99154800-99177000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:99155600-99169600	Weak transcription	NH-A	brain
29	chr2:99156400-99168800	Weak transcription	NHDF-Ad	bronchial
30	chr2:99156400-99197000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:99157200-99169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:99157200-99173600	Weak transcription	HUVEC	blood vessel
33	chr2:99157200-99179600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr2:99157400-99170800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr2:99157600-99169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:99158000-99177400	Strong transcription	Liver	Liver
37	chr2:99158200-99167000	Strong transcription	Lung	lung
38	chr2:99158800-99190600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr2:99159200-99166200	Strong transcription	Colon Smooth Muscle	Colon
40	chr2:99159400-99175800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:99159400-99177800	Strong transcription	Adipose Nuclei	Adipose
42	chr2:99159600-99165000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:99159600-99166200	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr2:99159600-99167000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:99159600-99167400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr2:99159600-99167400	Strong transcription	Fetal Intestine Small	intestine
47	chr2:99159600-99167600	Strong transcription	Rectal Smooth Muscle	rectum
48	chr2:99159600-99168000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:99159600-99176400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr2:99159800-99165000	Strong transcription	Gastric	stomach

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