Variant report

Variant	rs35410052
Chromosome Location	chr3:99766474-99766475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99721792..99723539-chr3:99765840..99767973,2	MCF-7	breast:
2	chr3:99757965..99760484-chr3:99766104..99767644,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13077700	1.00[EUR][1000 genomes]
rs13082186	1.00[EUR][1000 genomes]
rs13083461	1.00[EUR][1000 genomes]
rs71313578	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv999332	chr3:99690207-99774720	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99713600-99787800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:99741200-99766800	Weak transcription	Right Ventricle	heart
3	chr3:99752200-99774600	Weak transcription	Gastric	stomach
4	chr3:99757800-99766800	Weak transcription	Pancreas	Pancrea
5	chr3:99759000-99766600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:99759200-99768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:99761800-99766600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:99761800-99766800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:99762000-99766600	Enhancers	HSMMtube	muscle
10	chr3:99762000-99767200	Enhancers	NHDF-Ad	bronchial
11	chr3:99762000-99767600	Enhancers	HSMM	muscle
12	chr3:99762000-99778200	Weak transcription	Ovary	ovary
13	chr3:99762200-99766600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:99763000-99767600	Enhancers	NHLF	lung
15	chr3:99763600-99767200	Enhancers	Placenta	Placenta
16	chr3:99763800-99767400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:99764000-99766600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:99764000-99767200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:99764200-99767200	Enhancers	HUVEC	blood vessel
20	chr3:99764200-99767400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:99764200-99767400	Enhancers	NH-A	brain
22	chr3:99764400-99766600	Enhancers	Colon Smooth Muscle	Colon
23	chr3:99764400-99766600	Enhancers	Osteobl	bone
24	chr3:99764400-99766800	Enhancers	NHEK	skin
25	chr3:99764400-99767000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:99764400-99767200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:99764400-99767600	Enhancers	Fetal Muscle Leg	muscle
28	chr3:99764600-99766600	Enhancers	Psoas Muscle	Psoas
29	chr3:99764600-99766600	Enhancers	HMEC	breast
30	chr3:99764600-99767000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr3:99764600-99767200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:99764600-99767200	Enhancers	Brain Hippocampus Middle	brain
33	chr3:99764600-99767400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:99764600-99767600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:99764600-99767600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:99764600-99767800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:99764600-99768600	Enhancers	Fetal Intestine Large	intestine
38	chr3:99764600-99769000	Enhancers	Fetal Intestine Small	intestine
39	chr3:99765000-99766600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:99765000-99767400	Enhancers	Stomach Mucosa	stomach
41	chr3:99765000-99772800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr3:99765200-99766600	Weak transcription	Fetal Stomach	stomach
43	chr3:99765200-99767400	Enhancers	Right Atrium	heart
44	chr3:99765200-99767400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:99765600-99766600	Flanking Active TSS	Primary B cells from cord blood	blood
46	chr3:99765600-99766600	Enhancers	HepG2	liver
47	chr3:99765600-99766800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:99765600-99766800	Weak transcription	Lung	lung
49	chr3:99765600-99767400	Enhancers	Liver	Liver
50	chr3:99765800-99766600	Weak transcription	Spleen	Spleen

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