Variant report

Variant	rs35413173
Chromosome Location	chr22:31517434-31517435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31516152..31519079-chr22:31523414..31526420,3	MCF-7	breast:
2	chr22:31516943..31520253-chr22:31521243..31524070,4	K562	blood:

Variant related genes	Relation type
ENSG00000185133	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11089488	0.89[ASN][1000 genomes]
rs11703478	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12330010	0.89[ASN][1000 genomes]
rs13054770	0.89[ASN][1000 genomes]
rs2413027	0.80[EUR][1000 genomes]
rs35342535	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35657209	0.89[ASN][1000 genomes]
rs35685997	0.89[ASN][1000 genomes]
rs62236159	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7284757	0.81[EUR][1000 genomes]
rs8135353	0.89[ASN][1000 genomes]
rs8137317	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621184	0.89[ASN][1000 genomes]
rs9621185	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31504400-31517800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr22:31504400-31518000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:31504600-31518600	Weak transcription	Fetal Brain Female	brain
4	chr22:31512600-31517800	Weak transcription	Aorta	Aorta
5	chr22:31514200-31518400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr22:31514400-31517600	Weak transcription	Colonic Mucosa	Colon
7	chr22:31514400-31517600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr22:31514600-31518200	Weak transcription	Psoas Muscle	Psoas
9	chr22:31515400-31518000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr22:31515400-31518200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr22:31515400-31518200	Weak transcription	Placenta	Placenta
12	chr22:31515600-31518600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr22:31515600-31518600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr22:31515800-31518200	Weak transcription	Pancreas	Pancrea
15	chr22:31515800-31518400	Weak transcription	Spleen	Spleen
16	chr22:31516000-31517800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr22:31516000-31518600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr22:31516600-31517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr22:31516600-31517600	Weak transcription	Left Ventricle	heart
20	chr22:31516600-31517600	Weak transcription	Right Atrium	heart
21	chr22:31516600-31518000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr22:31516600-31518200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr22:31516600-31518200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr22:31516600-31518200	Weak transcription	Fetal Muscle Leg	muscle
25	chr22:31516600-31518400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr22:31516600-31518600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr22:31516600-31518600	Weak transcription	HSMM	muscle
28	chr22:31516800-31518200	Weak transcription	HSMMtube	muscle
29	chr22:31516800-31518400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr22:31516800-31518600	Enhancers	Fetal Intestine Large	intestine
31	chr22:31517000-31517800	Weak transcription	K562	blood
32	chr22:31517000-31518000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr22:31517000-31518200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr22:31517200-31517600	Weak transcription	Right Ventricle	heart
35	chr22:31517400-31517600	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr22:31517400-31518200	Enhancers	Fetal Heart	heart
37	chr22:31517400-31518200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr22:31517400-31518600	Enhancers	Fetal Intestine Small	intestine
39	chr22:31517400-31518600	Enhancers	Gastric	stomach

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