Variant report

Variant	rs35414058
Chromosome Location	chr1:93099082-93099083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10003706	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10011487	0.80[ASN][1000 genomes]
rs10014158	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10014956	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10017524	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10027032	0.80[ASN][1000 genomes]
rs1010190	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10513769	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11097565	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11097566	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11097575	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11725607	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11728887	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12503645	0.81[ASN][1000 genomes]
rs12509721	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13138073	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508462	0.80[ASN][1000 genomes]
rs1508469	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1508470	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1508475	0.81[ASN][1000 genomes]
rs1567287	0.83[ASN][1000 genomes]
rs1567288	0.80[ASN][1000 genomes]
rs1911790	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1911792	0.83[ASN][1000 genomes]
rs1983166	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2174937	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2865936	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3864228	0.80[ASN][1000 genomes]
rs3907814	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4377597	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6832426	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7435127	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7442272	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs960450	0.80[ASN][1000 genomes]
rs997658	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9990450	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93014800-93100200	Weak transcription	Right Ventricle	heart
2	chr1:93052000-93119400	Weak transcription	NHEK	skin
3	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:93055000-93100200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:93062000-93118800	Weak transcription	HMEC	breast
6	chr1:93063000-93100600	Weak transcription	Gastric	stomach
7	chr1:93064400-93100800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:93065200-93101000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:93065800-93119600	Weak transcription	NH-A	brain
11	chr1:93066800-93103000	Weak transcription	NHDF-Ad	bronchial
12	chr1:93066800-93114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:93067200-93101000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:93067400-93100800	Weak transcription	Brain Angular Gyrus	brain
15	chr1:93068200-93100600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:93068600-93100400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:93068600-93112600	Weak transcription	Brain Substantia Nigra	brain
18	chr1:93068800-93103200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:93069400-93104600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:93070000-93100800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:93070600-93100200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:93070600-93100600	Weak transcription	Colonic Mucosa	Colon
24	chr1:93070600-93101000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr1:93070800-93100800	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:93077200-93100600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:93080200-93100800	Weak transcription	Esophagus	oesophagus
28	chr1:93081200-93100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:93081200-93100800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:93082200-93101000	Weak transcription	HSMMtube	muscle
31	chr1:93082400-93101200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:93082600-93108600	Weak transcription	Psoas Muscle	Psoas
33	chr1:93082800-93100600	Weak transcription	Lung	lung
34	chr1:93082800-93100800	Weak transcription	Aorta	Aorta
35	chr1:93083400-93100400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:93083600-93101000	Weak transcription	Primary B cells from cord blood	blood
37	chr1:93083600-93101000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:93083600-93101000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:93083600-93106400	Weak transcription	Pancreas	Pancrea
40	chr1:93083800-93101000	Weak transcription	Fetal Kidney	kidney
41	chr1:93084000-93100800	Weak transcription	Left Ventricle	heart
42	chr1:93084000-93101000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:93084000-93101000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr1:93084200-93100200	Weak transcription	Fetal Lung	lung
45	chr1:93084200-93100600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:93084200-93100600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr1:93084200-93104000	Weak transcription	Spleen	Spleen
48	chr1:93084800-93100200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:93084800-93100400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:93084800-93100800	Weak transcription	Fetal Muscle Leg	muscle

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