Variant report

Variant	rs354151
Chromosome Location	chr12:30498300-30498301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10843731	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11050823	1.00[ASN][1000 genomes]
rs11050826	1.00[ASN][1000 genomes]
rs11050828	1.00[ASN][1000 genomes]
rs11050849	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11050851	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11050852	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11513492	1.00[ASN][1000 genomes]
rs11608277	1.00[ASN][1000 genomes]
rs11612317	1.00[ASN][1000 genomes]
rs11613370	1.00[ASN][1000 genomes]
rs11614392	0.83[ASN][1000 genomes]
rs12425538	0.84[CEU][hapmap]
rs12831890	1.00[CHB][hapmap]
rs1588008	0.80[EUR][1000 genomes]
rs1588010	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1588012	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1827907	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1896909	0.84[CEU][hapmap]
rs1991554	0.81[EUR][1000 genomes]
rs354125	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs354131	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs354136	1.00[ASN][1000 genomes]
rs4931322	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6487903	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6487904	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6487905	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs725063	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7303893	0.85[CEU][hapmap]
rs7304070	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs7309774	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7964943	1.00[ASN][1000 genomes]
rs7972984	0.82[EUR][1000 genomes]
rs7978437	1.00[ASN][1000 genomes]
rs891318	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv11198	chr12:30496609-30508640	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv20294	chr12:30498226-30501743	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30498200-30501400	Enhancers	Fetal Heart	heart

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