Variant report

Variant	rs35418511
Chromosome Location	chr1:183982307-183982308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12089543	1.00[ASN][1000 genomes]
rs12727244	1.00[ASN][1000 genomes]
rs12741795	1.00[ASN][1000 genomes]
rs12746606	1.00[ASN][1000 genomes]
rs12748062	1.00[ASN][1000 genomes]
rs12756153	1.00[ASN][1000 genomes]
rs12756229	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12758284	1.00[ASN][1000 genomes]
rs12760593	1.00[ASN][1000 genomes]
rs34922778	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650648	1.00[ASN][1000 genomes]
rs4651163	1.00[ASN][1000 genomes]
rs751411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv872583	chr1:183955574-184015663	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:183972400-183983000	Weak transcription	NHDF-Ad	bronchial
2	chr1:183972600-183987800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:183976200-183990200	Weak transcription	K562	blood
4	chr1:183976800-183984600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:183980200-183986600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:183980600-183982600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:183980800-183984400	Weak transcription	Brain Substantia Nigra	brain
8	chr1:183982000-183982800	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:183982000-183984400	Weak transcription	Brain Angular Gyrus	brain
10	chr1:183982000-183984600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:183982200-183984400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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