Variant report

Variant	rs35419419
Chromosome Location	chr4:60427102-60427103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11722923	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722926	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11723846	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11724733	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11724886	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11735419	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11737731	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12641812	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12643759	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12643819	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1482706	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1513536	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1543100	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137637	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137638	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2170585	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34162160	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34210287	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34220977	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34420256	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34615574	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35075922	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35245570	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35348484	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35497699	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35678957	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36017476	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4611960	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58588693	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66898372	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66923017	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67098781	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67151857	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67153640	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67663651	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67940515	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68086033	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811113	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6812387	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821353	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821949	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72612792	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73198590	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73820193	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7657581	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7661918	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7669671	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7676812	0.86[ASN][1000 genomes]
rs7678424	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7684222	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7697607	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879051	chr4:60335008-60442490	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012748	chr4:60385942-60546407	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007782	chr4:60385942-60550708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003847	chr4:60406832-60538697	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537107	chr4:60406832-60538697	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2760852	chr4:60424576-60863454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35419419	AOC3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60426000-60427200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:60426600-60427400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:60427000-60430600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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