Variant report

Variant	rs35428351
Chromosome Location	chr2:233633990-233633991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2344615	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35375923	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36038193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4441451	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6753206	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233565600-233641000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:233585200-233655000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:233606200-233638400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:233606800-233636800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:233611600-233645600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr2:233612000-233634000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr2:233612000-233634000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:233612000-233640000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:233612000-233644600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr2:233612200-233634000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:233612200-233634400	Strong transcription	Fetal Thymus	thymus
12	chr2:233612200-233638400	Strong transcription	Placenta	Placenta
13	chr2:233612600-233637200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:233613800-233635600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:233614000-233636800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:233614600-233643600	Weak transcription	Small Intestine	intestine
17	chr2:233617000-233636600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:233618600-233635600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:233620200-233640000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:233621400-233644400	Strong transcription	Liver	Liver
21	chr2:233622400-233635600	Weak transcription	Esophagus	oesophagus
22	chr2:233623600-233636800	Strong transcription	Fetal Intestine Large	intestine
23	chr2:233623800-233634200	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr2:233624400-233634000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:233624400-233640000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:233624800-233634000	Strong transcription	Adipose Nuclei	Adipose
27	chr2:233624800-233640000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:233625000-233634200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:233625000-233636200	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:233625200-233637600	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:233626000-233634000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr2:233626000-233636200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:233626200-233634000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:233626200-233636000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr2:233626200-233637600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr2:233627400-233636200	Strong transcription	Primary T cells from cord blood	blood
37	chr2:233627800-233645000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr2:233628600-233644200	Weak transcription	Ovary	ovary
39	chr2:233628600-233655400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:233629200-233635000	Weak transcription	HUVEC	blood vessel
41	chr2:233629200-233635600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr2:233629200-233655800	Weak transcription	Colonic Mucosa	Colon
43	chr2:233629400-233634000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:233629400-233635600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr2:233629400-233635600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr2:233629400-233635600	Weak transcription	Fetal Stomach	stomach
47	chr2:233629400-233635600	Weak transcription	Lung	lung
48	chr2:233629400-233635600	Weak transcription	Thymus	Thymus
49	chr2:233629400-233636800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr2:233629400-233639400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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