Variant report

Variant	rs35433085
Chromosome Location	chr9:85412760-85412761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11139750	0.83[ASN][1000 genomes]
rs11139751	0.83[ASN][1000 genomes]
rs11139788	0.99[ASN][1000 genomes]
rs13284468	0.84[ASN][1000 genomes]
rs1998302	1.00[ASN][1000 genomes]
rs1998304	0.98[ASN][1000 genomes]
rs34934271	0.86[ASN][1000 genomes]
rs35933972	0.83[ASN][1000 genomes]
rs4877235	0.84[ASN][1000 genomes]
rs4877705	0.83[ASN][1000 genomes]
rs4877706	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62576976	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35433085	PDE6D	trans	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85395400-85424800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85404600-85420400	Weak transcription	Gastric	stomach
3	chr9:85404600-85422200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:85404600-85422200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:85405000-85413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:85411400-85413200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:85411800-85413000	Enhancers	Fetal Lung	lung
8	chr9:85412400-85412800	Enhancers	Fetal Brain Female	brain
9	chr9:85412400-85413000	Enhancers	Fetal Heart	heart
10	chr9:85412600-85412800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr9:85412600-85413000	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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