Variant report

Variant	rs35434412
Chromosome Location	chr2:10472123-10472124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10466793..10468983-chr2:10471445..10473009,2	K562	blood:
2	chr2:10472099..10474167-chr2:10487438..10489460,2	K562	blood:
3	chr2:10470453..10473280-chr2:10497686..10499663,2	K562	blood:
4	chr2:10471045..10473599-chr2:10487391..10488938,2	K562	blood:
5	chr2:10445536..10447284-chr2:10469328..10472288,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12465534	0.94[EUR][1000 genomes]
rs12476711	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34468993	0.81[AMR][1000 genomes]
rs35790543	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35935820	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4669571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6716188	0.87[EUR][1000 genomes]
rs71439003	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10463400-10473600	Enhancers	Lung	lung
2	chr2:10464200-10473600	Enhancers	Fetal Intestine Large	intestine
3	chr2:10465600-10473000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr2:10466200-10473600	Genic enhancers	Fetal Intestine Small	intestine
5	chr2:10466400-10472800	Weak transcription	Fetal Kidney	kidney
6	chr2:10466600-10472200	Enhancers	Left Ventricle	heart
7	chr2:10467200-10482800	Weak transcription	Psoas Muscle	Psoas
8	chr2:10467600-10472400	Weak transcription	Fetal Heart	heart
9	chr2:10467600-10472800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:10468000-10473800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:10468400-10473800	Enhancers	Spleen	Spleen
12	chr2:10468600-10472200	Enhancers	Small Intestine	intestine
13	chr2:10468600-10477800	Weak transcription	Brain Angular Gyrus	brain
14	chr2:10468800-10473800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:10469400-10472200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:10469400-10472800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr2:10469400-10473000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr2:10469400-10473800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:10469400-10474200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:10469600-10472400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr2:10469600-10472800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr2:10469600-10473000	Enhancers	Right Atrium	heart
23	chr2:10469600-10473600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:10469600-10473600	Enhancers	Fetal Lung	lung
25	chr2:10469600-10473800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:10469600-10473800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr2:10469600-10473800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:10469600-10474200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:10469800-10472200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:10469800-10472400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr2:10469800-10472400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:10469800-10472400	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr2:10469800-10472600	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr2:10469800-10472800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr2:10469800-10472800	Enhancers	Fetal Brain Male	brain
36	chr2:10469800-10473000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr2:10469800-10473800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:10469800-10473800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:10469800-10473800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr2:10469800-10473800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr2:10469800-10473800	Enhancers	Pancreas	Pancrea
42	chr2:10470000-10472200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr2:10470000-10472200	Enhancers	Dnd41	blood
44	chr2:10470000-10472400	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr2:10470000-10472800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:10470200-10472200	Flanking Active TSS	GM12878-XiMat	blood
47	chr2:10470200-10473800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr2:10470400-10472200	Enhancers	Brain Substantia Nigra	brain
49	chr2:10470400-10473400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr2:10470400-10473800	Enhancers	H1 Cell Line	embryonic stem cell

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