Variant report

Variant	rs35435358
Chromosome Location	chr15:42274718-42274719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42271112..42275222-chr15:42276247..42280163,4	K562	blood:
2	chr15:42273602..42277544-chr15:42286910..42290718,3	K562	blood:
3	chr15:42273351..42275852-chr15:42348244..42350332,2	MCF-7	breast:
4	chr15:42271180..42275933-chr15:42275941..42280163,5	K562	blood:
5	chr15:42265104..42267796-chr15:42273066..42275623,2	K562	blood:

Variant related genes	Relation type
ENSG00000188089	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11857594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1668555	0.89[AFR][1000 genomes]
rs1668556	0.89[AFR][1000 genomes]
rs1668567	0.89[AFR][1000 genomes]
rs1704366	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
5	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42270800-42275000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:42271000-42276200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:42271600-42274800	Enhancers	K562	blood
4	chr15:42271600-42275000	Enhancers	Left Ventricle	heart
5	chr15:42273000-42301800	Weak transcription	Fetal Intestine Small	intestine
6	chr15:42273200-42288000	Weak transcription	Lung	lung
7	chr15:42273400-42276600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:42273600-42274800	Enhancers	Primary T cells from cord blood	blood
9	chr15:42273600-42275200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:42273600-42278600	Weak transcription	Colonic Mucosa	Colon
11	chr15:42273800-42274800	Enhancers	Fetal Muscle Leg	muscle
12	chr15:42273800-42275000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:42273800-42275000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:42273800-42275000	Enhancers	Fetal Muscle Trunk	muscle
15	chr15:42273800-42276000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:42273800-42290000	Weak transcription	Right Atrium	heart
17	chr15:42273800-42301800	Weak transcription	Esophagus	oesophagus
18	chr15:42274000-42275000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:42274200-42274800	Weak transcription	Gastric	stomach
20	chr15:42274200-42275000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:42274200-42275200	Enhancers	Fetal Heart	heart
22	chr15:42274200-42276400	Weak transcription	Spleen	Spleen

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