Variant report

Variant	rs35437239
Chromosome Location	chr20:53261145-53261146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52815188..52820648-chr20:53259065..53265987,10	MCF-7	breast:
2	chr20:53254267..53257182-chr20:53259848..53265627,6	MCF-7	breast:
3	chr20:53212410..53215334-chr20:53259205..53262055,2	MCF-7	breast:
4	chr20:52813822..52828208-chr20:53257867..53268573,36	MCF-7	breast:
5	chr20:52821463..52842130-chr20:53255769..53272087,93	MCF-7	breast:
6	chr20:52746822..52749791-chr20:53258985..53261806,2	MCF-7	breast:
7	chr20:52780969..52783846-chr20:53260965..53263576,2	MCF-7	breast:
8	chr20:53240556..53242975-chr20:53260288..53262063,2	MCF-7	breast:
9	chr20:52830354..52840699-chr20:53260794..53267992,26	MCF-7	breast:
10	chr20:52881899..52886453-chr20:53260602..53265051,8	MCF-7	breast:
11	chr20:52681034..52683636-chr20:53260094..53262163,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55645278	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6023456	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6068930	0.91[EUR][1000 genomes]
rs873078	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53242400-53270200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:53257600-53266000	Weak transcription	Brain Germinal Matrix	brain
3	chr20:53260200-53264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:53260400-53266200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:53260600-53262000	Weak transcription	Fetal Brain Female	brain
6	chr20:53260800-53261800	Weak transcription	Pancreas	Pancrea
7	chr20:53260800-53262400	Weak transcription	Fetal Brain Male	brain
8	chr20:53260800-53265200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:53260800-53266200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:53260800-53266200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr20:53260800-53266200	Weak transcription	NH-A	brain
12	chr20:53260800-53266200	Weak transcription	NHDF-Ad	bronchial
13	chr20:53260800-53266200	Weak transcription	NHLF	lung
14	chr20:53260800-53266200	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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