Variant report

Variant	rs35438004
Chromosome Location	chr11:63533701-63533702
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:63533656-63533706	HCF	heart:	n/a
2	chr11:63533656-63533706	HRE	kidney:	n/a
3	chr11:63533656-63533706	HAEpiC	amniotic membrane:	n/a
4	chr11:63533656-63533706	NT2-D1	testis:	n/a
5	chr11:63533656-63533706	HNPCEpiC	eye:	n/a
6	chr11:63533656-63533706	LNCaP	prostate:	n/a
7	chr11:63533656-63533706	GM19239	blood:	n/a
8	chr11:63533656-63533706	RPTEC	kidney:	n/a
9	chr11:63533656-63533706	AG09309	skin:	n/a
10	chr11:63533656-63533706	SKMC	muscle:	n/a
11	chr11:63533656-63533706	SK-N-MC	brain:	n/a
12	chr11:63533656-63533706	AoSMC	blood vessel:	n/a
13	chr11:63533656-63533706	HEK293	kidney:	embryo
14	chr11:63533656-63533706	CMK	blood:	n/a
15	chr11:63533656-63533706	U87	brain:	n/a
16	chr11:63533656-63533706	GM12878	blood:	n/a
17	chr11:63533656-63533706	Caco-2	colon:	n/a
18	chr11:63533656-63533706	MCF10A-Er-Src	breast:	n/a
19	chr11:63533656-63533706	BJ	skin:	n/a
20	chr11:63533656-63533706	ovcar-3	ovarian:	n/a
21	chr11:63533656-63533706	HRPEpiC	eye:	n/a
22	chr11:63533656-63533706	IMR90	lung:	fetal
23	chr11:63533656-63533706	NB4	blood:	n/a
24	chr11:63533656-63533706	SK-N-SH	brain:	n/a
25	chr11:63533656-63533706	HCM	heart:	n/a
26	chr11:63533656-63533706	GM06990	blood:	n/a
27	chr11:63533656-63533706	Jurkat	blood:	n/a
28	chr11:63533656-63533706	AG04450	lung:	fetal
29	chr11:63533656-63533706	HUVEC	blood vessel:	n/a
30	chr11:63533656-63533706	NHDF-neo	bronchial:	n/a
31	chr11:63533656-63533706	ProgFib	skin:	n/a
32	chr11:63533656-63533706	HIPEpiC	eye:	n/a
33	chr11:63533656-63533706	Hepatocyte	liver:	n/a
34	chr11:63533656-63533706	PrEC	prostate:	n/a
35	chr11:63533656-63533706	SAEC	small airway:	n/a
36	chr11:63533656-63533706	HPAEpiC	pulmonary alveolar:	n/a
37	chr11:63533656-63533706	GM12891	blood:	n/a
38	chr11:63533656-63533706	H1-hESC	embryonic stem cell:	embryo
39	chr11:63533656-63533706	MCF-7	breast:	n/a
40	chr11:63533656-63533706	HCPEpiC	choroid plexus:	n/a
41	chr11:63533656-63533706	Hela-S3	cervix:	n/a
42	chr11:63533656-63533706	ECC-1	luminal epithelium:	n/a
43	chr11:63533656-63533706	AG04449	skin:	fetal
44	chr11:63533656-63533706	HEEpiC	esophagus:	n/a
45	chr11:63533656-63533706	HL-60	blood:	n/a
46	chr11:63533656-63533706	GM12892	blood:	n/a
47	chr11:63533656-63533706	BE2_C	brain:	n/a
48	chr11:63533656-63533706	AG09319	gingival:	n/a
49	chr11:63533656-63533706	HRCEpiC	kidney:	n/a
50	chr11:63533656-63533706	K562	blood:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63448182..63450282-chr11:63533461..63536298,4	MCF-7	breast:
2	chr11:63533005..63535080-chr11:63601950..63603947,2	MCF-7	breast:
3	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
4	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
5	chr11:63531277..63535286-chr11:63705300..63707994,3	MCF-7	breast:
6	chr11:63532131..63535124-chr11:63579146..63582872,4	K562	blood:
7	chr11:63437417..63439651-chr11:63532413..63534182,2	MCF-7	breast:

No data

Variant related genes	Relation type
C11orf95	CpG island
ENSG00000133318	Chromatin interaction
ENSG00000256280	Chromatin interaction
ENSG00000184743	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv1821734	chr11:63533300-63537509	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63509000-63534800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:63511000-63534800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:63516000-63534800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:63516400-63534200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:63516600-63533800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:63519400-63534800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:63521200-63534600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:63521400-63534400	Weak transcription	Primary B cells from cord blood	blood
9	chr11:63521400-63534800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:63525000-63534400	Weak transcription	HSMMtube	muscle
11	chr11:63525800-63534600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:63526200-63534600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr11:63526600-63534800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:63526600-63534800	Weak transcription	Small Intestine	intestine
15	chr11:63528000-63534200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:63528000-63534200	Weak transcription	Fetal Kidney	kidney
17	chr11:63528400-63533800	Weak transcription	HMEC	breast
18	chr11:63528400-63534000	Weak transcription	HSMM	muscle
19	chr11:63528400-63534600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:63528800-63534400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:63529200-63534400	Enhancers	Fetal Brain Male	brain
22	chr11:63529200-63534400	Weak transcription	K562	blood
23	chr11:63529200-63534600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:63529200-63534800	Weak transcription	Primary T cells from cord blood	blood
25	chr11:63529200-63534800	Enhancers	Fetal Heart	heart
26	chr11:63529400-63534400	Weak transcription	Osteobl	bone
27	chr11:63529400-63534800	Enhancers	Fetal Lung	lung
28	chr11:63529600-63534000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:63529600-63534400	Weak transcription	NHDF-Ad	bronchial
30	chr11:63530600-63533800	Strong transcription	Thymus	Thymus
31	chr11:63531000-63534200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr11:63531200-63533800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:63531200-63533800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:63531200-63534000	Weak transcription	HUVEC	blood vessel
35	chr11:63531200-63534400	Weak transcription	Brain Angular Gyrus	brain
36	chr11:63531200-63534400	Weak transcription	NHEK	skin
37	chr11:63531200-63534800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:63531200-63534800	Weak transcription	Esophagus	oesophagus
39	chr11:63531200-63534800	Weak transcription	Left Ventricle	heart
40	chr11:63531400-63533800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:63531400-63534000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:63531400-63534800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:63531400-63535000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:63531600-63533800	Genic enhancers	Fetal Stomach	stomach
45	chr11:63531600-63534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:63531600-63534000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:63531600-63534000	Weak transcription	Right Atrium	heart
48	chr11:63531600-63534200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:63531800-63533800	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr11:63531800-63534000	Flanking Active TSS	Liver	Liver

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