Variant report

Variant	rs35441406
Chromosome Location	chr4:55517506-55517507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1005438	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11730497	0.89[ASN][1000 genomes]
rs11733357	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11736016	0.89[ASN][1000 genomes]
rs12498193	0.89[ASN][1000 genomes]
rs12504244	0.86[ASN][1000 genomes]
rs12512899	0.87[ASN][1000 genomes]
rs13128858	0.88[EUR][1000 genomes]
rs13138563	0.89[ASN][1000 genomes]
rs17827974	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2215726	0.89[ASN][1000 genomes]
rs2237031	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237035	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2282778	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2282779	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2282780	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2282781	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2703456	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34284864	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3756197	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3819387	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3819389	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3819392	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3822213	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4864915	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6554196	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6825657	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71599647	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs759082	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs759083	0.88[EUR][1000 genomes]
rs7655556	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7655588	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7656858	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7675203	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7697799	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1010702	chr4:55440944-55528450	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55516800-55517800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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