Variant report

Variant	rs35441946
Chromosome Location	chr3:49895712-49895713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49891965..49895757-chr3:49941315..49943532,3	MCF-7	breast:
2	chr3:49893459..49895808-chr3:49900255..49902105,2	K562	blood:
3	chr3:49894189..49896710-chr3:49908532..49911054,2	K562	blood:
4	chr3:49895516..49897068-chr3:49902453..49904501,2	MCF-7	breast:
5	chr3:49894011..49896487-chr3:49902240..49904028,2	K562	blood:
6	chr3:49893970..49895819-chr3:49897460..49901140,3	K562	blood:
7	chr3:49893997..49896267-chr3:49897540..49900036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228008	Chromatin interaction
ENSG00000164076	Chromatin interaction
ENSG00000264706	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34484573	1.00[ASN][1000 genomes]
rs35917071	1.00[ASN][1000 genomes]
rs4395393	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070774	1.00[ASN][1000 genomes]
rs71325001	1.00[ASN][1000 genomes]
rs73074855	1.00[ASN][1000 genomes]
rs73077107	1.00[ASN][1000 genomes]
rs73077157	1.00[ASN][1000 genomes]
rs73079003	1.00[ASN][1000 genomes]
rs73079014	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1809827	chr3:49812331-49934179	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49894600-49896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:49894600-49896200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:49894600-49896200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:49894600-49896200	Weak transcription	Spleen	Spleen
5	chr3:49894600-49896400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:49894600-49896400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:49894600-49896400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:49894600-49896800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:49894600-49896800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:49894600-49896800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:49894600-49897200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:49894600-49899200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:49894600-49899400	Weak transcription	Brain Angular Gyrus	brain
14	chr3:49894600-49902000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:49894600-49903000	Weak transcription	Gastric	stomach
16	chr3:49894600-49903600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:49894600-49903800	Weak transcription	Fetal Intestine Large	intestine
18	chr3:49894600-49904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:49894600-49906400	Weak transcription	Right Atrium	heart
20	chr3:49894800-49896200	Bivalent Enhancer	HepG2	liver
21	chr3:49894800-49896400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:49894800-49896800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:49894800-49900000	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:49894800-49901000	Weak transcription	Fetal Brain Male	brain
25	chr3:49895000-49897000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:49895200-49896200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:49895200-49899400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:49895200-49899600	Strong transcription	Fetal Brain Female	brain
29	chr3:49895200-49900000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:49895400-49899000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:49895600-49897000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:49895600-49899000	Strong transcription	H9 Cell Line	embryonic stem cell

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