Variant report

Variant	rs35442317
Chromosome Location	chr7:147740120-147740121
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147734255..147736925-chr7:147737815..147740650,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12539685	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12540049	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12540218	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12667420	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13225246	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13228312	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13228553	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13236734	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17170789	0.88[EUR][1000 genomes]
rs17170792	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170793	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170794	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34378091	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34910390	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34987081	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35100395	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35275476	0.94[ASN][1000 genomes]
rs35294118	0.87[EUR][1000 genomes]
rs35631331	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57783871	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62473287	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62473288	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62473289	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62473290	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6955458	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs719310	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs719312	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7781064	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147736800-147740200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:147737800-147740400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:147738400-147748000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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