Variant report

Variant	rs35448501
Chromosome Location	chr17:19451351-19451352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19449855..19452466-chr17:19452745..19455660,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61668687	1.00[AMR][1000 genomes]
rs7213388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428337	chr17:19340045-19585774	Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19438400-19454400	Weak transcription	Aorta	Aorta
2	chr17:19438400-19456200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:19442400-19451400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:19443400-19461200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr17:19448400-19451600	Enhancers	Liver	Liver
6	chr17:19449800-19453200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:19450200-19461200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:19450200-19462600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:19450400-19451400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:19450400-19451400	Weak transcription	HepG2	liver
11	chr17:19450400-19452200	Weak transcription	A549	lung
12	chr17:19450400-19452800	Weak transcription	Fetal Intestine Small	intestine
13	chr17:19450400-19453000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr17:19450400-19453400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr17:19450400-19453800	Weak transcription	Brain Hippocampus Middle	brain
16	chr17:19450400-19470600	Weak transcription	Esophagus	oesophagus
17	chr17:19450600-19453000	Weak transcription	Fetal Intestine Large	intestine
18	chr17:19450600-19454200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr17:19450600-19454200	Weak transcription	Stomach Mucosa	stomach
20	chr17:19450600-19454400	Weak transcription	Colonic Mucosa	Colon
21	chr17:19450600-19457200	Weak transcription	Spleen	Spleen
22	chr17:19451200-19451600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr17:19451200-19451600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:19451200-19451600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr17:19451200-19451800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:19451200-19451800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr17:19451200-19456200	Strong transcription	Skeletal Muscle Male	skeletal muscle

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