Variant report

Variant	rs35450130
Chromosome Location	chr5:107145771-107145772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr5:107145741-107145865	GM12878	blood:	n/a	n/a
2	TEAD4	chr5:107145250-107145775	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RN7SKP122	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58284357	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62355958	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62358081	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62358084	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022155	chr5:107138981-107149604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107140400-107148800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107140800-107146600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:107141400-107146000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:107141400-107146600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:107143000-107148000	Weak transcription	HSMM	muscle
6	chr5:107143600-107145800	Weak transcription	Fetal Heart	heart
7	chr5:107143600-107148000	Weak transcription	HSMMtube	muscle
8	chr5:107143800-107145800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:107144000-107145800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr5:107144000-107145800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr5:107144000-107146200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107144000-107146600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr5:107144200-107145800	Enhancers	NH-A	brain
14	chr5:107144400-107146200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:107144600-107145800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:107144600-107145800	Enhancers	NHDF-Ad	bronchial
18	chr5:107144800-107145800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:107144800-107146000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:107144800-107147600	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:107144800-107148400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:107144800-107150200	Weak transcription	Right Atrium	heart
23	chr5:107145000-107146000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:107145000-107146000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr5:107145000-107148000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:107145200-107145800	Enhancers	Hela-S3	cervix
27	chr5:107145200-107146200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:107145200-107146600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr5:107145200-107148000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:107145400-107146600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr5:107145400-107146600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:107145400-107146800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:107145600-107146000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr5:107145600-107146800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:107145600-107147600	Weak transcription	Fetal Stomach	stomach
36	chr5:107145600-107148000	Weak transcription	NHLF	lung

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