Variant report

Variant	rs35451371
Chromosome Location	chr6:11785581-11785582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11777595..11779965-chr6:11784218..11787369,4	K562	blood:
2	chr6:11783514..11786582-chr6:11793568..11797099,3	K562	blood:
3	chr6:11782929..11785704-chr6:11787439..11790880,3	K562	blood:
4	chr6:11777595..11779965-chr6:11784636..11787369,2	K562	blood:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11753689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59642026	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72821839	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11772200-11786000	Weak transcription	Gastric	stomach
2	chr6:11774000-11791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11774200-11785600	Weak transcription	HMEC	breast
4	chr6:11777200-11785800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:11778600-11786200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:11778800-11785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:11779800-11786200	Weak transcription	Fetal Thymus	thymus
8	chr6:11779800-11787800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:11780000-11786400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:11780600-11786000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:11780600-11786000	Weak transcription	Pancreas	Pancrea
12	chr6:11780800-11785600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:11784200-11785600	Weak transcription	K562	blood
14	chr6:11784800-11785600	Enhancers	GM12878-XiMat	blood
15	chr6:11785200-11786000	Enhancers	Fetal Intestine Large	intestine
16	chr6:11785200-11787400	Enhancers	Stomach Mucosa	stomach
17	chr6:11785400-11785800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:11785400-11785800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr6:11785400-11785800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:11785400-11786000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:11785400-11786000	Enhancers	Fetal Intestine Small	intestine
22	chr6:11785400-11786200	Enhancers	Hela-S3	cervix

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