Variant report

Variant	rs35454314
Chromosome Location	chr4:85885975-85885976
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:85885883-85885997	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:85879778..85882729-chr4:85884440..85887298,2	K562	blood:
2	chr4:85820113..85822349-chr4:85884941..85887197,2	MCF-7	breast:
3	chr4:85503339..85505737-chr4:85885750..85887907,3	MCF-7	breast:
4	chr4:85881229..85883388-chr4:85885235..85887298,2	K562	blood:
5	chr4:85790487..85793474-chr4:85885792..85887497,2	MCF-7	breast:

No data

Variant related genes	Relation type
WDFY3-AS2	TF binding region
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv879516	chr4:85877561-85895436	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3359788	chr4:85885953-85888501	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85865200-85886400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:85866000-85886200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:85872000-85886600	Weak transcription	Lung	lung
4	chr4:85873400-85886600	Weak transcription	Esophagus	oesophagus
5	chr4:85874600-85886200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:85877400-85886200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:85877600-85886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:85879600-85886200	Weak transcription	Fetal Lung	lung
9	chr4:85879800-85886200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:85880000-85886000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:85880000-85886200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:85880000-85886200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:85880000-85886200	Weak transcription	NH-A	brain
14	chr4:85880000-85886600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:85880000-85886600	Weak transcription	Spleen	Spleen
16	chr4:85881000-85886200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:85881400-85886000	Weak transcription	A549	lung
18	chr4:85881600-85886200	Weak transcription	Right Ventricle	heart
19	chr4:85883400-85886000	Weak transcription	NHLF	lung
20	chr4:85884200-85886200	Weak transcription	Brain Substantia Nigra	brain
21	chr4:85884800-85886200	Enhancers	Liver	Liver
22	chr4:85885200-85886200	Enhancers	Fetal Brain Male	brain
23	chr4:85885200-85886200	Weak transcription	NHDF-Ad	bronchial
24	chr4:85885200-85886400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:85885200-85886400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:85885200-85886600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
27	chr4:85885200-85886800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr4:85885400-85886000	Enhancers	Gastric	stomach
29	chr4:85885400-85886000	Enhancers	Pancreas	Pancrea
30	chr4:85885400-85886000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr4:85885400-85886200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:85885400-85886200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr4:85885400-85886200	Enhancers	Brain Hippocampus Middle	brain
34	chr4:85885400-85886200	Enhancers	Fetal Muscle Leg	muscle
35	chr4:85885400-85886400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:85885400-85886400	Enhancers	Duodenum Mucosa	Duodenum
37	chr4:85885400-85886400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr4:85885400-85886400	Enhancers	Placenta	Placenta
39	chr4:85885400-85886400	Enhancers	Left Ventricle	heart
40	chr4:85885400-85886800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:85885400-85886800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:85885400-85888400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:85885400-85888400	Active TSS	Fetal Kidney	kidney
44	chr4:85885400-85889400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:85885600-85886000	Enhancers	Adipose Nuclei	Adipose
46	chr4:85885600-85886200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:85885600-85886200	Enhancers	Right Atrium	heart
48	chr4:85885600-85886800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr4:85885800-85886000	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr4:85885800-85886000	Active TSS	iPS-20b Cell Line	embryonic stem cell

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