Variant report

Variant	rs35454727
Chromosome Location	chr4:119774324-119774325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13145450	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17324912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34371198	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34596379	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34742402	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35708799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35748313	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55877323	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67882376	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6814969	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6817440	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119772200-119774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119772400-119779200	Weak transcription	Ovary	ovary
3	chr4:119772400-119788200	Weak transcription	NHDF-Ad	bronchial
4	chr4:119773000-119775000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr4:119773200-119774800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:119773400-119775200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:119773600-119774400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:119773600-119774600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:119773600-119774600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:119773800-119774600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:119774000-119774600	Enhancers	HUVEC	blood vessel
12	chr4:119774200-119774400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:119774200-119774400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr4:119774200-119774600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:119774200-119775000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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