Variant report

Variant	rs35456924
Chromosome Location	chr19:39391889-39391890
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr19:39391502-39391910	HUVEC	blood vessel:	n/a	n/a
2	HCFC1	chr19:39389667-39391967	Hela-S3	cervix:	n/a	n/a
3	JUN	chr19:39389766-39391981	K562	blood:	n/a	chr19:39390500-39390509 chr19:39391294-39391306
4	GATA3	chr19:39389595-39391907	A549	lung:	n/a	chr19:39389669-39389679 chr19:39391697-39391705 chr19:39390295-39390304

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:39338733..39343337-chr19:39388774..39392675,12	K562	blood:
2	chr19:39390700..39392797-chr19:39401919..39404314,3	K562	blood:
3	chr19:39320984..39323718-chr19:39390338..39392657,3	K562	blood:
4	chr19:39388836..39392687-chr19:39409083..39412619,5	K562	blood:
5	chr19:39390131..39392480-chr19:39402477..39404053,2	MCF-7	breast:
6	chr19:39388885..39392214-chr19:39419332..39422757,5	MCF-7	breast:
7	chr19:39386472..39392494-chr19:39418718..39424791,9	K562	blood:
8	chr19:39389410..39392783-chr19:39420988..39423307,4	MCF-7	breast:
9	chr19:39338023..39344706-chr19:39388476..39392998,12	MCF-7	breast:
10	chr19:39391259..39393276-chr19:39393440..39395044,2	MCF-7	breast:
11	chr19:39390485..39392144-chr19:39409724..39411734,2	MCF-7	breast:
12	chr19:39338478..39344219-chr19:39387112..39393304,19	K562	blood:

No data

Variant related genes	Relation type
SIRT2	TF binding region
ENSG00000128626	Chromatin interaction
ENSG00000104835	Chromatin interaction
ENSG00000104823	Chromatin interaction
ENSG00000262484	Chromatin interaction
ENSG00000104824	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	esv1798153	chr19:39338663-39399277	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv911674	chr19:39391547-39398631	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39389800-39392000	Active TSS	NHEK	skin
2	chr19:39391000-39392000	Flanking Active TSS	HUVEC	blood vessel
3	chr19:39391000-39394800	Weak transcription	Spleen	Spleen
4	chr19:39391000-39395000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:39391000-39395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr19:39391200-39392000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:39391200-39392000	Flanking Active TSS	Liver	Liver
8	chr19:39391200-39392000	Weak transcription	Left Ventricle	heart
9	chr19:39391200-39392000	Weak transcription	Lung	lung
10	chr19:39391200-39392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:39391200-39392200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr19:39391200-39392200	Enhancers	Primary B cells from peripheral blood	blood
13	chr19:39391200-39392400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr19:39391200-39392400	Flanking Active TSS	Dnd41	blood
15	chr19:39391200-39392600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr19:39391200-39392600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr19:39391200-39394800	Weak transcription	Gastric	stomach
18	chr19:39391200-39395000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr19:39391200-39395200	Weak transcription	Pancreas	Pancrea
20	chr19:39391200-39395400	Weak transcription	Aorta	Aorta
21	chr19:39391200-39395400	Weak transcription	Esophagus	oesophagus
22	chr19:39391200-39395600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr19:39391200-39420800	Weak transcription	Small Intestine	intestine
24	chr19:39391400-39392000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr19:39391400-39392000	Weak transcription	Fetal Stomach	stomach
26	chr19:39391400-39392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr19:39391400-39392200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:39391400-39392200	Enhancers	Brain Hippocampus Middle	brain
29	chr19:39391400-39392200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr19:39391400-39392400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr19:39391400-39392400	Flanking Active TSS	Hela-S3	cervix
32	chr19:39391400-39392600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr19:39391400-39392600	Enhancers	Placenta	Placenta
34	chr19:39391400-39392600	Enhancers	Stomach Mucosa	stomach
35	chr19:39391400-39395200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr19:39391400-39395600	Weak transcription	Brain Germinal Matrix	brain
37	chr19:39391400-39397400	Weak transcription	Fetal Brain Female	brain
38	chr19:39391400-39397600	Weak transcription	Psoas Muscle	Psoas
39	chr19:39391400-39402200	Weak transcription	Fetal Brain Male	brain
40	chr19:39391600-39392000	Enhancers	Primary hematopoietic stem cells	blood
41	chr19:39391600-39392200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr19:39391600-39392200	Enhancers	Primary B cells from cord blood	blood
43	chr19:39391600-39392200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr19:39391600-39392200	Enhancers	Fetal Intestine Small	intestine
45	chr19:39391600-39392200	Weak transcription	Fetal Thymus	thymus
46	chr19:39391600-39392400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr19:39391600-39392400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr19:39391600-39394800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr19:39391600-39395000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr19:39391600-39395000	Weak transcription	NHDF-Ad	bronchial

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