Variant report

Variant	rs35460126
Chromosome Location	chr15:43522467-43522468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43517905..43520300-chr15:43521041..43522787,2	K562	blood:
2	chr15:43520201..43525813-chr15:43528150..43534434,7	K562	blood:

Variant related genes	Relation type
ENSG00000104055	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12902267	1.00[AMR][1000 genomes]
rs12915280	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs35230166	1.00[AMR][1000 genomes]
rs35926237	1.00[AMR][1000 genomes]
rs62019439	1.00[AMR][1000 genomes]
rs62020703	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43511800-43526600	Weak transcription	Esophagus	oesophagus
2	chr15:43514000-43522600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:43518400-43522600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:43521400-43522600	Enhancers	K562	blood
5	chr15:43521400-43523000	Enhancers	Brain Cingulate Gyrus	brain
6	chr15:43521400-43523200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:43521600-43523000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:43521600-43523200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr15:43521600-43523400	Enhancers	Brain Hippocampus Middle	brain
10	chr15:43521600-43523800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:43521600-43525600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:43521800-43523200	Enhancers	Brain Substantia Nigra	brain
13	chr15:43521800-43523400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:43521800-43523400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:43521800-43523600	Enhancers	Adipose Nuclei	Adipose
16	chr15:43522000-43522600	Enhancers	Left Ventricle	heart
17	chr15:43522200-43522600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr15:43522200-43522600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:43522200-43522800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:43522200-43523000	Enhancers	Brain Anterior Caudate	brain
21	chr15:43522400-43523400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:43522400-43523600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:43522400-43526000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links