Variant report

Variant	rs35461885
Chromosome Location	chr11:65650515-65650516
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65274736..65277553-chr11:65649720..65652648,2	K562	blood:
2	chr11:65482077..65483919-chr11:65649020..65651069,2	MCF-7	breast:
3	chr11:65486644..65488723-chr11:65650344..65652189,2	K562	blood:
4	chr11:65478671..65480330-chr11:65648521..65651673,3	MCF-7	breast:
5	chr11:65646632..65650808-chr11:65654844..65660529,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175602	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000172977	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12418103	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12418781	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3867128	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59416249	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60576917	0.85[ASN][1000 genomes]
rs72924800	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv530622	chr11:65649068-65661361	Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65641000-65654400	Weak transcription	Fetal Heart	heart
2	chr11:65641400-65650600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:65641400-65651000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:65641400-65654000	Weak transcription	Small Intestine	intestine
5	chr11:65641600-65651000	Weak transcription	Left Ventricle	heart
6	chr11:65641600-65651000	Weak transcription	Hela-S3	cervix
7	chr11:65641600-65651200	Weak transcription	Psoas Muscle	Psoas
8	chr11:65641600-65655000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:65641600-65655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:65641600-65655000	Weak transcription	Right Atrium	heart
11	chr11:65641800-65651000	Weak transcription	Stomach Mucosa	stomach
12	chr11:65646000-65651000	Weak transcription	K562	blood
13	chr11:65647200-65652000	Strong transcription	Fetal Stomach	stomach
14	chr11:65647400-65652000	Strong transcription	Fetal Intestine Small	intestine
15	chr11:65648200-65651200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:65648200-65651800	Strong transcription	Placenta Amnion	Placenta Amnion
17	chr11:65648600-65651600	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr11:65648600-65651800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:65648600-65652200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:65648800-65651200	Strong transcription	Brain Germinal Matrix	brain
21	chr11:65648800-65651200	Weak transcription	HUVEC	blood vessel
22	chr11:65648800-65651800	Strong transcription	Fetal Brain Female	brain
23	chr11:65648800-65651800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:65648800-65651800	Strong transcription	NHEK	skin
25	chr11:65648800-65651800	Strong transcription	NHLF	lung
26	chr11:65648800-65652000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:65648800-65652200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:65648800-65652400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:65649000-65650800	Genic enhancers	Primary T cells fromperipheralblood	blood
30	chr11:65649000-65651000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:65649000-65651000	Weak transcription	HMEC	breast
32	chr11:65649000-65651800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:65649000-65651800	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:65649000-65652000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:65649000-65652000	Strong transcription	Right Ventricle	heart
36	chr11:65649000-65652000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:65649000-65652200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:65649000-65653800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:65649000-65654400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:65649000-65654400	Strong transcription	Placenta	Placenta
41	chr11:65649000-65655000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:65649000-65655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:65649200-65650800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:65649200-65650800	Weak transcription	NH-A	brain
45	chr11:65649200-65651600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:65649200-65651600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr11:65649200-65651600	Strong transcription	Spleen	Spleen
48	chr11:65649200-65651800	Strong transcription	Brain Anterior Caudate	brain
49	chr11:65649200-65652000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:65649200-65652000	Strong transcription	Fetal Thymus	thymus

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