Variant report

Variant	rs35462624
Chromosome Location	chr7:87230668-87230669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:87223860-87231374	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ABCB1	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28381861	1.00[AMR][1000 genomes]
rs45462795	1.00[AMR][1000 genomes]
rs45542937	1.00[AMR][1000 genomes]
rs45554931	1.00[AMR][1000 genomes]
rs45562831	1.00[AMR][1000 genomes]
rs45574932	1.00[AMR][1000 genomes]
rs45592439	1.00[AMR][1000 genomes]
rs45594937	1.00[AMR][1000 genomes]
rs45597334	1.00[AMR][1000 genomes]
rs45615437	1.00[AMR][1000 genomes]
rs8187804	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1026153	chr7:86905796-87258822	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87227400-87230800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:87227800-87230800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr7:87230000-87231000	Active TSS	NHLF	lung
4	chr7:87230400-87230800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:87230400-87230800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:87230400-87230800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
7	chr7:87230400-87230800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:87230400-87230800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:87230400-87230800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
10	chr7:87230600-87230800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:87230600-87230800	Bivalent Enhancer	Primary B cells from cord blood	blood
12	chr7:87230600-87230800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr7:87230600-87230800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:87230600-87230800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr7:87230600-87230800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:87230600-87230800	Enhancers	Liver	Liver
17	chr7:87230600-87230800	Enhancers	Colon Smooth Muscle	Colon
18	chr7:87230600-87230800	Active TSS	Duodenum Mucosa	Duodenum
19	chr7:87230600-87230800	Enhancers	Fetal Intestine Large	intestine
20	chr7:87230600-87230800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr7:87230600-87230800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
22	chr7:87230600-87230800	Enhancers	HepG2	liver
23	chr7:87230600-87230800	Active TSS	NH-A	brain
24	chr7:87230600-87231000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr7:87230600-87231200	Enhancers	Primary T cells from cord blood	blood
26	chr7:87230600-87231600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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