Variant report

Variant	rs35462997
Chromosome Location	chr5:115783119-115783120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:115781887-115783214	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr5:115781799-115783670	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr5:115782729-115783334	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr5:115783119-115783584	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:115783076-115783126	Caco-2	colon:	n/a
2	chr5:115783076-115783126	AG04450	lung:	fetal
3	chr5:115783076-115783126	HAEpiC	amniotic membrane:	n/a
4	chr5:115783076-115783126	Jurkat	blood:	n/a
5	chr5:115783076-115783126	SAEC	small airway:	n/a
6	chr5:115783076-115783126	HEK293	kidney:	embryo
7	chr5:115783076-115783126	MCF10A-Er-Src	breast:	n/a
8	chr5:115783076-115783126	HMEC	breast:	n/a
9	chr5:115783076-115783126	Hela-S3	cervix:	n/a
10	chr5:115783076-115783126	HUVEC	blood vessel:	n/a
11	chr5:115783076-115783126	HCF	heart:	n/a
12	chr5:115783076-115783126	U87	brain:	n/a
13	chr5:115783076-115783126	GM12878	blood:	n/a
14	chr5:115783076-115783126	CMK	blood:	n/a
15	chr5:115783076-115783126	GM19239	blood:	n/a
16	chr5:115783076-115783126	NT2-D1	testis:	n/a
17	chr5:115783076-115783126	SKMC	muscle:	n/a
18	chr5:115783076-115783126	K562	blood:	n/a
19	chr5:115783076-115783126	BJ	skin:	n/a
20	chr5:115783076-115783126	HRE	kidney:	n/a
21	chr5:115783076-115783126	ProgFib	skin:	n/a
22	chr5:115783076-115783126	HCT-116	colon:	n/a
23	chr5:115783076-115783126	IMR90	lung:	fetal
24	chr5:115783076-115783126	MCF-7	breast:	n/a
25	chr5:115783076-115783126	NB4	blood:	n/a
26	chr5:115783076-115783126	LNCaP	prostate:	n/a
27	chr5:115783076-115783126	GM12891	blood:	n/a
28	chr5:115783076-115783126	H1-hESC	embryonic stem cell:	embryo
29	chr5:115783076-115783126	NH-A	brain:	n/a
30	chr5:115783076-115783126	PFSK-1	brain:	n/a
31	chr5:115783076-115783126	HepG2	liver:	n/a
32	chr5:115783076-115783126	HRPEpiC	eye:	n/a
33	chr5:115783076-115783126	GM12892	blood:	n/a
34	chr5:115783076-115783126	HRCEpiC	kidney:	n/a
35	chr5:115783076-115783126	RPTEC	kidney:	n/a
36	chr5:115783076-115783126	A549	lung:	n/a
37	chr5:115783076-115783126	T-47D	breast:	n/a
38	chr5:115783076-115783126	AG09319	gingival:	n/a
39	chr5:115783076-115783126	NHDF-neo	bronchial:	n/a
40	chr5:115783076-115783126	PrEC	prostate:	n/a
41	chr5:115783076-115783126	AoSMC	blood vessel:	n/a
42	chr5:115783076-115783126	Hepatocyte	liver:	n/a
43	chr5:115783076-115783126	AG04449	skin:	fetal
44	chr5:115783076-115783126	AG10803	skin:	n/a
45	chr5:115783076-115783126	HIPEpiC	eye:	n/a
46	chr5:115783076-115783126	BE2_C	brain:	n/a
47	chr5:115783076-115783126	SK-N-MC	brain:	n/a
48	chr5:115783076-115783126	HCM	heart:	n/a
49	chr5:115783076-115783126	HL-60	blood:	n/a
50	chr5:115783076-115783126	GM06990	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000248445	TF binding region
ENSG00000256121	TF binding region
ENSG00000248445	CpG island
ENSG00000256121	CpG island

rs_ID	r²[population]
rs61620790	1.00[AMR][1000 genomes]
rs73781063	1.00[AMR][1000 genomes]
rs73781065	1.00[AMR][1000 genomes]
rs73781066	1.00[AMR][1000 genomes]
rs73781068	1.00[AMR][1000 genomes]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
3	chr5:115776600-115784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:115778200-115785800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:115778200-115787600	Weak transcription	HMEC	breast
8	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
10	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
11	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
12	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
13	chr5:115779400-115784400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:115779400-115784400	Strong transcription	Fetal Intestine Small	intestine
15	chr5:115780200-115783800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:115780200-115784000	Strong transcription	Fetal Stomach	stomach
17	chr5:115780200-115784800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:115780200-115785000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr5:115780200-115787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:115780400-115783800	Strong transcription	Ovary	ovary
21	chr5:115780400-115783800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr5:115780400-115784400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:115780400-115785800	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr5:115780600-115783600	Strong transcription	Colonic Mucosa	Colon
25	chr5:115780600-115783600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:115780600-115783600	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:115780600-115784200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:115780600-115785000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr5:115780600-115789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:115780800-115784400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr5:115780800-115784400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr5:115781000-115783600	Strong transcription	Fetal Kidney	kidney
33	chr5:115781000-115783800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:115781000-115783800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:115781000-115784400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:115781200-115784400	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr5:115781200-115784400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:115781200-115785000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:115781200-115785600	Strong transcription	Fetal Muscle Leg	muscle
40	chr5:115781400-115789600	Weak transcription	Primary B cells from cord blood	blood
41	chr5:115781600-115783400	Strong transcription	Brain Germinal Matrix	brain
42	chr5:115781600-115783800	Strong transcription	Brain Hippocampus Middle	brain
43	chr5:115781600-115783800	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:115781600-115784000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:115781600-115785000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr5:115781800-115783400	Strong transcription	Right Ventricle	heart
47	chr5:115781800-115783600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr5:115781800-115783600	Strong transcription	Brain Cingulate Gyrus	brain
49	chr5:115781800-115783600	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr5:115781800-115783600	Strong transcription	Fetal Brain Female	brain

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