Variant report

Variant	rs35465380
Chromosome Location	chr4:89993124-89993125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10516825	0.95[AMR][1000 genomes]
rs10516827	0.95[AMR][1000 genomes]
rs13109946	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13115364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13117850	0.80[AMR][1000 genomes]
rs13131363	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13139223	0.83[EUR][1000 genomes]
rs13141671	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13144759	0.93[EUR][1000 genomes]
rs17768150	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34437549	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35205061	0.86[EUR][1000 genomes]
rs36080226	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6815978	0.90[EUR][1000 genomes]
rs6824116	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71609549	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72668131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7682131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv436954	chr4:89984278-90003086	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89992600-89993800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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