Variant report

Variant	rs35467022
Chromosome Location	chr16:70454722-70454723
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70453838..70456062-chr16:70463491..70466263,2	MCF-7	breast:
2	chr16:70450061..70452140-chr16:70453514..70455458,2	MCF-7	breast:
3	chr16:70411659..70418028-chr16:70451032..70456707,7	MCF-7	breast:
4	chr16:70441229..70447070-chr16:70453059..70456907,6	K562	blood:

Variant related genes	Relation type
ENSG00000260111	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16970247	0.81[AFR][1000 genomes]
rs16970267	0.81[AFR][1000 genomes]
rs17884111	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70432800-70454800	Weak transcription	Pancreas	Pancrea
2	chr16:70432800-70457000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr16:70433200-70461600	Weak transcription	Aorta	Aorta
4	chr16:70433400-70461600	Weak transcription	Brain Substantia Nigra	brain
5	chr16:70433600-70461600	Weak transcription	Colon Smooth Muscle	Colon
6	chr16:70438400-70461600	Weak transcription	HSMM	muscle
7	chr16:70438600-70461600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:70438600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr16:70439200-70454800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:70439200-70458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr16:70441800-70461600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr16:70442200-70458600	Weak transcription	NH-A	brain
13	chr16:70445000-70461800	Weak transcription	Brain Germinal Matrix	brain
14	chr16:70445200-70461600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr16:70446200-70456800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr16:70446200-70457400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr16:70446400-70461600	Weak transcription	HSMMtube	muscle
18	chr16:70446600-70458600	Weak transcription	Osteobl	bone
19	chr16:70446800-70458600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr16:70448000-70456800	Enhancers	Fetal Heart	heart
21	chr16:70448000-70458000	Enhancers	Placenta	Placenta
22	chr16:70448000-70464200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr16:70448200-70456200	Enhancers	Psoas Muscle	Psoas
24	chr16:70448400-70460800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr16:70448400-70461800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr16:70449600-70457400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr16:70450000-70457200	Enhancers	Right Ventricle	heart
28	chr16:70450600-70455600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr16:70450600-70455800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr16:70450600-70456000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:70450600-70456400	Genic enhancers	Fetal Muscle Leg	muscle
32	chr16:70450600-70457200	Genic enhancers	Fetal Muscle Trunk	muscle
33	chr16:70450600-70457200	Enhancers	Left Ventricle	heart
34	chr16:70450600-70457400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr16:70451000-70457000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr16:70451200-70454800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr16:70451400-70455400	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr16:70451400-70455600	Enhancers	Brain Anterior Caudate	brain
39	chr16:70451400-70456000	Enhancers	Primary T cells fromperipheralblood	blood
40	chr16:70451800-70457000	Enhancers	Liver	Liver
41	chr16:70451800-70457200	Enhancers	Right Atrium	heart
42	chr16:70451800-70461400	Weak transcription	NHLF	lung
43	chr16:70452200-70455200	Enhancers	Adipose Nuclei	Adipose
44	chr16:70452200-70455800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr16:70452200-70459000	Weak transcription	Fetal Kidney	kidney
46	chr16:70452400-70454800	Enhancers	Lung	lung
47	chr16:70452400-70455000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr16:70452400-70455800	Genic enhancers	Fetal Stomach	stomach
49	chr16:70452600-70454800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:70452600-70455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links