Variant report

Variant	rs35475848
Chromosome Location	chr3:158428693-158428694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:158428490-158428699	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:158428448-158428701	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:158428403-158428704	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr3:158428470-158429379	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158422890..158425062-chr3:158426331..158429823,3	MCF-7	breast:
2	chr3:158423211..158426282-chr3:158428433..158432187,3	K562	blood:

Variant related genes	Relation type
RARRES1	TF binding region
ENSG00000118849	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16829307	1.00[EUR][1000 genomes]
rs16829309	1.00[EUR][1000 genomes]
rs60460783	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv948755	chr3:158388780-158672287	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1007141	chr3:158415840-158433128	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158390800-158429400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:158390800-158430200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:158390800-158430400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:158390800-158430800	Weak transcription	Right Ventricle	heart
5	chr3:158390800-158430800	Weak transcription	Stomach Mucosa	stomach
6	chr3:158390800-158432800	Weak transcription	Spleen	Spleen
7	chr3:158390800-158444200	Weak transcription	Gastric	stomach
8	chr3:158390800-158445400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:158391000-158429200	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:158391000-158430600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:158391000-158438800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:158397000-158429200	Weak transcription	Ovary	ovary
13	chr3:158397000-158443400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:158397000-158448000	Weak transcription	Thymus	Thymus
15	chr3:158399600-158445400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:158400600-158429000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:158403600-158438600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:158408400-158430200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:158408400-158443000	Weak transcription	HepG2	liver
20	chr3:158409000-158429800	Weak transcription	Small Intestine	intestine
21	chr3:158409800-158439000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:158410800-158430400	Weak transcription	Fetal Thymus	thymus
23	chr3:158411600-158439400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:158412200-158440800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:158412400-158439200	Weak transcription	Fetal Kidney	kidney
26	chr3:158415000-158440800	Weak transcription	Colonic Mucosa	Colon
27	chr3:158415800-158429600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:158416000-158430800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:158417600-158440600	Weak transcription	Aorta	Aorta
30	chr3:158420600-158429400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr3:158421600-158431200	Strong transcription	Primary T cells from cord blood	blood
32	chr3:158421800-158435600	Strong transcription	Fetal Intestine Small	intestine
33	chr3:158422600-158429400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:158423200-158431800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:158423800-158438800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr3:158424200-158446000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:158424600-158429200	Weak transcription	Psoas Muscle	Psoas
38	chr3:158425000-158429400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr3:158425000-158431000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr3:158425200-158429000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr3:158425200-158431000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:158425200-158431400	Strong transcription	Dnd41	blood
43	chr3:158425400-158429000	Strong transcription	Adipose Nuclei	Adipose
44	chr3:158425400-158429400	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:158425600-158429200	Strong transcription	Placenta	Placenta
46	chr3:158425800-158429200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:158426200-158429600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:158426400-158429800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:158426400-158430800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:158426400-158432400	Strong transcription	Fetal Intestine Large	intestine

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