Variant report

Variant	rs35486665
Chromosome Location	chr7:83829568-83829569
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12113887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707631	0.80[EUR][1000 genomes]
rs13231596	0.80[EUR][1000 genomes]
rs13234176	0.80[EUR][1000 genomes]
rs13247197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35806139	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83825200-83830200	Weak transcription	Hela-S3	cervix
2	chr7:83825400-83836000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:83825800-83834200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:83825800-83836400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:83825800-83841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:83826000-83829600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:83826000-83830200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:83826000-83830200	Weak transcription	NH-A	brain
9	chr7:83826000-83833800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:83826000-83834200	Weak transcription	Fetal Brain Male	brain
11	chr7:83826200-83829800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:83826200-83830400	Weak transcription	NHDF-Ad	bronchial
13	chr7:83826200-83830400	Weak transcription	NHLF	lung
14	chr7:83826400-83833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:83828000-83829600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:83828000-83829800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:83828000-83829800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:83828000-83830200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:83828000-83831600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:83828000-83832200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:83828000-83832600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:83828400-83830200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:83828400-83832400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:83829000-83830600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:83829000-83831000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:83829200-83831400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr7:83829200-83832600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:83829400-83830200	Enhancers	A549	lung
29	chr7:83829400-83831400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:83829400-83831400	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links