Variant report

Variant	rs35489217
Chromosome Location	chr5:111332075-111332076
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11742388	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13160991	1.00[AFR][1000 genomes]
rs13189380	1.00[AFR][1000 genomes]
rs34213425	1.00[AFR][1000 genomes]
rs34511481	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs67508382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71579164	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111329200-111332800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111331400-111332800	Enhancers	NH-A	brain
3	chr5:111331400-111333200	Enhancers	HSMM	muscle
4	chr5:111331400-111336200	Enhancers	NHLF	lung
5	chr5:111331600-111332200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:111331600-111338400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:111331800-111333000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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