Variant report

Variant	rs35494764
Chromosome Location	chr4:21949450-21949451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10516406	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11728026	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509508	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13118537	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1849542	0.81[ASN][1000 genomes]
rs67111937	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21947600-21950800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr4:21948000-21951400	Active TSS	Brain Anterior Caudate	brain
3	chr4:21948600-21950000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
4	chr4:21948600-21950000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:21948800-21950800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
6	chr4:21948800-21951000	Active TSS	Ovary	ovary
7	chr4:21949200-21949600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:21949200-21949800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:21949200-21950000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
10	chr4:21949200-21951200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr4:21949400-21949600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr4:21949400-21949600	Bivalent/Poised TSS	Fetal Brain Male	brain
13	chr4:21949400-21949600	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
14	chr4:21949400-21949800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
15	chr4:21949400-21949800	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr4:21949400-21951000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
17	chr4:21949400-21951000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
18	chr4:21949400-21951200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr4:21949400-21951200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links