Variant report

Variant	rs35495760
Chromosome Location	chr11:34523050-34523051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34516973..34519937-chr11:34521285..34524160,2	MCF-7	breast:
2	chr11:34514573..34518104-chr11:34518598..34523939,6	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1001179	0.90[ASN][1000 genomes]
rs11032718	0.90[ASN][1000 genomes]
rs11032722	1.00[ASN][1000 genomes]
rs11032723	1.00[ASN][1000 genomes]
rs11032724	1.00[ASN][1000 genomes]
rs11032728	1.00[ASN][1000 genomes]
rs11604331	0.90[ASN][1000 genomes]
rs12790145	1.00[ASN][1000 genomes]
rs12797274	1.00[ASN][1000 genomes]
rs1535719	0.90[ASN][1000 genomes]
rs17269931	1.00[ASN][1000 genomes]
rs2231821	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231828	0.90[ASN][1000 genomes]
rs34234992	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34366473	1.00[ASN][1000 genomes]
rs34901344	1.00[ASN][1000 genomes]
rs475043	0.90[ASN][1000 genomes]
rs494024	0.85[ASN][1000 genomes]
rs499406	0.90[ASN][1000 genomes]
rs508370	0.81[ASN][1000 genomes]
rs511895	0.90[ASN][1000 genomes]
rs524167	0.90[ASN][1000 genomes]
rs533425	0.90[ASN][1000 genomes]
rs55898107	1.00[ASN][1000 genomes]
rs560807	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv897211	chr11:34514941-34609541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35495760	CAT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34518400-34534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34521200-34524000	Enhancers	Adipose Nuclei	Adipose
3	chr11:34521600-34524400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:34521800-34523400	Enhancers	HepG2	liver
5	chr11:34521800-34523800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:34521800-34524200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:34522000-34524200	Enhancers	Gastric	stomach
8	chr11:34522400-34524400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:34522400-34524600	Enhancers	NH-A	brain
10	chr11:34522600-34523200	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr11:34522600-34523200	Enhancers	Lung	lung
12	chr11:34522600-34523600	Enhancers	HSMM	muscle
13	chr11:34522600-34523600	Enhancers	Osteobl	bone
14	chr11:34522600-34524200	Enhancers	NHDF-Ad	bronchial
15	chr11:34522600-34524400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:34522600-34524400	Enhancers	HSMMtube	muscle
17	chr11:34522600-34524600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:34522600-34524600	Enhancers	Liver	Liver
19	chr11:34522600-34524600	Enhancers	Fetal Lung	lung
20	chr11:34522800-34523200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:34522800-34523800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:34522800-34524000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:34522800-34524000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:34522800-34524200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:34522800-34524200	Enhancers	Placenta	Placenta
26	chr11:34522800-34524400	Flanking Active TSS	Hela-S3	cervix
27	chr11:34522800-34524400	Enhancers	NHLF	lung
28	chr11:34522800-34524600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:34522800-34524600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:34523000-34523400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr11:34523000-34523800	Enhancers	HMEC	breast
32	chr11:34523000-34524000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:34523000-34524000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:34523000-34524200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:34523000-34524200	Enhancers	Brain Anterior Caudate	brain
36	chr11:34523000-34524200	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links