Variant report

Variant	rs35496557
Chromosome Location	chr9:96885434-96885435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12006342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12555314	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35271736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35888804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3909256	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56317717	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96860800-96886800	Weak transcription	Aorta	Aorta
2	chr9:96867600-96889600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:96871400-96896400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:96873400-96888600	Weak transcription	HSMM	muscle
5	chr9:96873600-96885600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:96874200-96896400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:96874400-96885600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:96875400-96887200	Weak transcription	Brain Anterior Caudate	brain
9	chr9:96875800-96886600	Weak transcription	Adipose Nuclei	Adipose
10	chr9:96881600-96885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:96881800-96896000	Weak transcription	Left Ventricle	heart
12	chr9:96883400-96886600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:96883400-96896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:96884200-96886200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:96884200-96888400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr9:96884200-96888800	Weak transcription	Brain Angular Gyrus	brain
17	chr9:96884400-96886000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:96885200-96885600	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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