Variant report

Variant	rs35505884
Chromosome Location	chr2:87035139-87035140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86991626..86993002-chr2:87034779..87035758,6	MCF-7	breast:
2	chr2:87027429..87029598-chr2:87032662..87035467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153561	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12994456	0.97[ASN][1000 genomes]
rs13019439	0.97[ASN][1000 genomes]
rs13023213	0.97[ASN][1000 genomes]
rs13024420	0.97[ASN][1000 genomes]
rs13024609	0.97[ASN][1000 genomes]
rs13032379	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1515950	0.97[ASN][1000 genomes]
rs3020726	0.97[ASN][1000 genomes]
rs3020728	0.84[ASN][1000 genomes]
rs34198915	0.97[ASN][1000 genomes]
rs34256565	0.97[ASN][1000 genomes]
rs34492196	0.97[ASN][1000 genomes]
rs34546581	0.97[ASN][1000 genomes]
rs34613828	0.97[ASN][1000 genomes]
rs34813683	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34855635	0.97[ASN][1000 genomes]
rs34988194	0.97[ASN][1000 genomes]
rs35290870	0.97[ASN][1000 genomes]
rs35437846	0.97[ASN][1000 genomes]
rs35626322	0.97[ASN][1000 genomes]
rs35723887	0.97[ASN][1000 genomes]
rs35739120	0.97[ASN][1000 genomes]
rs35786939	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3810831	0.97[ASN][1000 genomes]
rs4366909	0.97[ASN][1000 genomes]
rs4832315	0.82[ASN][1000 genomes]
rs55816457	0.97[ASN][1000 genomes]
rs55817008	0.97[ASN][1000 genomes]
rs6710361	0.97[ASN][1000 genomes]
rs6755452	0.97[ASN][1000 genomes]
rs71411867	0.97[ASN][1000 genomes]
rs71411869	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv10063	chr2:86940988-87084360	Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002420	chr2:86948835-87172715	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv874472	chr2:86961252-87071474	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1008817	chr2:86970406-87172715	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv14382	chr2:86972214-87174121	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv997982	chr2:86972834-87105864	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1007746	chr2:86972834-87172715	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv458585	chr2:86974318-87108211	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv582373	chr2:86974318-87108211	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1007307	chr2:86974563-87055214	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv535809	chr2:86974563-87055214	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1004572	chr2:86975514-87082883	Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv535811	chr2:86975514-87082883	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv532319	chr2:87024867-88005418	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
16	nsv961427	chr2:87032925-87059989	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:87034000-87037000	Active TSS	Thymus	Thymus
2	chr2:87034000-87037400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
3	chr2:87034200-87035200	Active TSS	Fetal Intestine Small	intestine
4	chr2:87034200-87035400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:87034200-87035400	Active TSS	Fetal Brain Female	brain
6	chr2:87034200-87035600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:87034200-87035800	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr2:87034200-87037200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr2:87034400-87035200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:87034400-87035200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:87034400-87035400	Active TSS	Fetal Kidney	kidney
12	chr2:87034400-87035600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr2:87034400-87035600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:87034400-87035600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:87034400-87035600	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr2:87034400-87035600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
17	chr2:87034400-87035600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr2:87034400-87035600	Active TSS	Fetal Brain Male	brain
19	chr2:87034400-87035600	Active TSS	Fetal Heart	heart
20	chr2:87034400-87035600	Active TSS	Right Atrium	heart
21	chr2:87034400-87035600	Active TSS	NHEK	skin
22	chr2:87034400-87035800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr2:87034400-87035800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
24	chr2:87034400-87035800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:87034400-87035800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr2:87034400-87035800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:87034400-87035800	Active TSS	Brain Substantia Nigra	brain
28	chr2:87034400-87035800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
29	chr2:87034400-87036000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr2:87034400-87036000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr2:87034400-87036000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:87034400-87036000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:87034400-87036000	Flanking Active TSS	Right Ventricle	heart
34	chr2:87034400-87036200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
35	chr2:87034400-87036200	Flanking Active TSS	HMEC	breast
36	chr2:87034600-87035200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:87034600-87035200	Active TSS	Aorta	Aorta
38	chr2:87034600-87035200	Active TSS	Brain Angular Gyrus	brain
39	chr2:87034600-87035200	Flanking Active TSS	Brain Cingulate Gyrus	brain
40	chr2:87034600-87035200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr2:87034600-87035200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
42	chr2:87034600-87035200	Active TSS	Psoas Muscle	Psoas
43	chr2:87034600-87035200	Flanking Active TSS	Spleen	Spleen
44	chr2:87034600-87035400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:87034600-87035400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
46	chr2:87034600-87035400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr2:87034600-87035400	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr2:87034600-87035400	Active TSS	Ovary	ovary
49	chr2:87034600-87035400	Flanking Active TSS	Pancreas	Pancrea
50	chr2:87034600-87035600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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