Variant report

Variant	rs35506008
Chromosome Location	chr20:22780795-22780796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16984562	0.84[AFR][1000 genomes]
rs34096397	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6075967	0.85[EUR][1000 genomes]
rs7262870	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22776400-22780800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr20:22776400-22785800	Weak transcription	Right Atrium	heart
3	chr20:22776600-22781400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr20:22776600-22781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:22777000-22781400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr20:22777400-22782400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr20:22777600-22781000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr20:22777600-22782800	Weak transcription	Aorta	Aorta
9	chr20:22778200-22782000	Weak transcription	NHLF	lung
10	chr20:22778400-22782000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr20:22778600-22780800	Weak transcription	HMEC	breast
12	chr20:22778600-22781400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr20:22778600-22782800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:22778600-22786200	Weak transcription	Gastric	stomach
15	chr20:22778800-22780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr20:22778800-22781000	Weak transcription	Placenta	Placenta
17	chr20:22778800-22781600	Weak transcription	Lung	lung
18	chr20:22779000-22783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr20:22780000-22781400	Enhancers	HSMMtube	muscle
20	chr20:22780000-22781600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr20:22780400-22780800	Enhancers	HepG2	liver
22	chr20:22780400-22781800	Enhancers	A549	lung
23	chr20:22780400-22783400	Enhancers	HSMM	muscle
24	chr20:22780400-22784400	Enhancers	Fetal Muscle Leg	muscle
25	chr20:22780600-22781000	Enhancers	NHEK	skin
26	chr20:22780600-22782600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links