Variant report

Variant	rs35506365
Chromosome Location	chr14:71231184-71231185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71221857..71224156-chr14:71229104..71232104,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10873240	0.83[AFR][1000 genomes]
rs12590049	0.81[ASN][1000 genomes]
rs17108546	0.81[ASN][1000 genomes]
rs17177097	0.81[ASN][1000 genomes]
rs55717811	0.81[ASN][1000 genomes]
rs72721934	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71206800-71231600	Weak transcription	Brain Anterior Caudate	brain
2	chr14:71209400-71238200	Weak transcription	Fetal Stomach	stomach
3	chr14:71209400-71238400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:71209400-71238400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:71212000-71238200	Weak transcription	Fetal Intestine Small	intestine
6	chr14:71215800-71232200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:71216400-71238200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:71216600-71245800	Weak transcription	Brain Germinal Matrix	brain
9	chr14:71216800-71238400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:71220600-71231400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:71220600-71238600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:71220800-71240400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:71220800-71266400	Weak transcription	Fetal Intestine Large	intestine
14	chr14:71221000-71237600	Weak transcription	Fetal Kidney	kidney
15	chr14:71221800-71239600	Weak transcription	Liver	Liver
16	chr14:71222200-71238000	Weak transcription	Esophagus	oesophagus
17	chr14:71222200-71238200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:71222200-71238200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:71222200-71258200	Weak transcription	HepG2	liver
20	chr14:71222400-71238200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:71222600-71274600	Weak transcription	Hela-S3	cervix
22	chr14:71222800-71238200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:71223000-71258400	Weak transcription	Primary T cells from cord blood	blood
24	chr14:71223000-71266600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:71223400-71240000	Weak transcription	Pancreas	Pancrea
26	chr14:71223600-71232200	Weak transcription	Primary B cells from cord blood	blood
27	chr14:71224000-71258000	Weak transcription	Dnd41	blood
28	chr14:71227600-71238000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:71227800-71235200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:71227800-71238000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:71227800-71238400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:71227800-71245200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr14:71227800-71245600	Weak transcription	Lung	lung
34	chr14:71227800-71257800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:71228000-71235000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:71228000-71235200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:71228000-71236400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:71228000-71237800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:71228000-71238200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:71228000-71238200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:71228000-71238400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:71228000-71238400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:71228000-71242000	Weak transcription	GM12878-XiMat	blood
44	chr14:71228000-71245600	Weak transcription	Gastric	stomach
45	chr14:71228000-71258000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:71228000-71258000	Weak transcription	A549	lung
47	chr14:71228200-71251400	Weak transcription	Fetal Brain Female	brain
48	chr14:71228200-71258000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr14:71230200-71234000	Weak transcription	NHEK	skin
50	chr14:71230200-71235400	Weak transcription	HMEC	breast

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