Variant report

Variant	rs35510904
Chromosome Location	chr11:104405582-104405583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10502036	0.83[ASN][1000 genomes]
rs10791717	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10791719	0.81[ASN][1000 genomes]
rs10895693	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895700	0.81[EUR][1000 genomes]
rs10895705	0.82[EUR][1000 genomes]
rs10895706	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895707	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10895708	0.81[ASN][1000 genomes]
rs10895711	0.81[ASN][1000 genomes]
rs11226379	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226380	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226382	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226384	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226405	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226411	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226426	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226428	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226430	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226431	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226433	0.81[ASN][1000 genomes]
rs11226439	0.83[ASN][1000 genomes]
rs11226441	0.83[ASN][1000 genomes]
rs11226442	0.81[ASN][1000 genomes]
rs11226443	0.81[ASN][1000 genomes]
rs12361024	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12364844	0.83[ASN][1000 genomes]
rs12798355	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12799900	0.81[ASN][1000 genomes]
rs12800409	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12803385	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1471923	0.81[EUR][1000 genomes]
rs1487689	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1586464	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1893461	0.83[ASN][1000 genomes]
rs1942502	0.81[ASN][1000 genomes]
rs1942520	0.81[ASN][1000 genomes]
rs1942521	0.81[ASN][1000 genomes]
rs34793132	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55779335	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56754151	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59832858	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61893183	0.81[ASN][1000 genomes]
rs61893194	0.81[ASN][1000 genomes]
rs722354	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv898352	chr11:104274535-104452042	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv898353	chr11:104274535-104497607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv428579	chr11:104298339-104459797	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv898354	chr11:104309414-104417374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1054278	chr11:104317164-104562129	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1053886	chr11:104328822-104562129	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1037091	chr11:104330237-104559477	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv556216	chr11:104333651-104560789	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1048500	chr11:104348766-104548809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35510904	CASP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104404600-104405600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:104404600-104405600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:104404600-104406200	Enhancers	Brain Germinal Matrix	brain
4	chr11:104404800-104405600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:104404800-104405600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:104404800-104405600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:104404800-104406000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:104405000-104405600	Enhancers	Fetal Brain Female	brain
9	chr11:104405000-104405600	Enhancers	HUVEC	blood vessel
10	chr11:104405000-104405600	Enhancers	NH-A	brain
11	chr11:104405400-104405600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:104405400-104405600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr11:104405400-104405600	Active TSS	A549	lung

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