Variant report

Variant	rs355196
Chromosome Location	chr4:166671834-166671835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs355165	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs355169	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs355173	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs355176	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs355184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs355189	0.87[EUR][1000 genomes]
rs355195	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2754222	chr4:166606890-166737921	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs355196	TRIM61	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166662600-166685000	Weak transcription	HMEC	breast
2	chr4:166668200-166681600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:166669000-166673000	Weak transcription	HUVEC	blood vessel
4	chr4:166670200-166672000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:166670200-166678200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:166670400-166672000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:166670400-166672200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:166670400-166672800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:166670600-166672400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:166671200-166674600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:166671400-166672400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:166671800-166672800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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