Variant report
| Variant | rs35526423 |
|---|---|
| Chromosome Location | chr8:96288920-96288921 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253773 | Chromatin interaction |
| ENSG00000156172 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs17265463 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17669960 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34308441 | 0.94[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs34393748 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35084958 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35169611 | 1.00[AFR][1000 genomes] |
| rs35234362 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35255852 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35790752 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs71532355 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7459448 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7841148 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023866 | chr8:96273255-96306378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
