Variant report

Variant	rs35527042
Chromosome Location	chr3:48963431-48963432
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:48963199-48964380	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ARIH2	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13070414	1.00[EUR][1000 genomes]
rs13073126	1.00[EUR][1000 genomes]
rs13073962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34581457	1.00[EUR][1000 genomes]
rs34798641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34812097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35075544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71324925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71324930	1.00[EUR][1000 genomes]
rs71324936	1.00[EUR][1000 genomes]
rs71615479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980012	chr3:48935037-48963512	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957200-48965000	Weak transcription	Small Intestine	intestine
2	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:48957600-48964400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:48957600-48964400	Weak transcription	HSMMtube	muscle
5	chr3:48957600-48965000	Weak transcription	Fetal Kidney	kidney
6	chr3:48957600-48974400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:48957800-48964000	Weak transcription	HMEC	breast
8	chr3:48957800-48964600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:48957800-48964600	Weak transcription	Aorta	Aorta
10	chr3:48957800-48965000	Weak transcription	Right Ventricle	heart
11	chr3:48958000-48963600	Weak transcription	A549	lung
12	chr3:48958000-48964400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:48958000-48964400	Weak transcription	Stomach Mucosa	stomach
14	chr3:48958000-48965000	Weak transcription	Fetal Brain Male	brain
15	chr3:48958400-48964000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:48958800-48965400	Strong transcription	Fetal Intestine Small	intestine
17	chr3:48959000-48965200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:48959000-48965200	Strong transcription	Fetal Stomach	stomach
19	chr3:48959000-48968400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:48959000-48971600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:48959000-48974000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:48959000-48976000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:48959000-48976200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:48959200-48963800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:48959200-48964000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:48959200-48964200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:48959200-48964800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:48959200-48965000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr3:48959200-48968200	Strong transcription	Thymus	Thymus
30	chr3:48959200-48971000	Strong transcription	Fetal Muscle Leg	muscle
31	chr3:48959200-48973600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:48959400-48964000	Strong transcription	Spleen	Spleen
33	chr3:48959400-48964600	Weak transcription	Gastric	stomach
34	chr3:48959400-48965400	Strong transcription	Brain Germinal Matrix	brain
35	chr3:48959400-48968200	Strong transcription	Fetal Intestine Large	intestine
36	chr3:48959400-48976200	Strong transcription	Fetal Thymus	thymus
37	chr3:48959600-48963800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:48959600-48964000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:48959600-48964200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:48959600-48964200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr3:48959600-48964200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr3:48959600-48964200	Strong transcription	Osteobl	bone
43	chr3:48959600-48964600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:48959600-48967200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:48959600-48975800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:48959800-48963600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:48959800-48964000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:48959800-48964200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:48959800-48964200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:48959800-48964600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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