Variant report

Variant	rs35530664
Chromosome Location	chr9:18904163-18904164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10124966	0.89[ASN][1000 genomes]
rs10963819	0.86[EUR][1000 genomes]
rs11793025	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1327504	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1359843	0.84[ASN][1000 genomes]
rs1359844	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35275925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4320629	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4977460	0.85[ASN][1000 genomes]
rs4977461	0.85[ASN][1000 genomes]
rs4977462	0.85[ASN][1000 genomes]
rs7031202	0.84[ASN][1000 genomes]
rs7467533	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7873965	0.84[ASN][1000 genomes]
rs7874517	0.83[ASN][1000 genomes]
rs934482	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18894800-18909200	Weak transcription	Fetal Heart	heart
2	chr9:18896800-18910600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:18897000-18905000	Weak transcription	HSMMtube	muscle
4	chr9:18897000-18905200	Weak transcription	NHLF	lung
5	chr9:18897000-18910600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:18897200-18905600	Weak transcription	Aorta	Aorta
7	chr9:18897400-18920400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:18897600-18906600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:18897800-18905000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:18898200-18905600	Weak transcription	Fetal Stomach	stomach
11	chr9:18898400-18904600	Weak transcription	Osteobl	bone
12	chr9:18898400-18905200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:18898800-18904800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:18898800-18904800	Weak transcription	NH-A	brain
15	chr9:18902000-18904800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:18902800-18904200	Strong transcription	NHDF-Ad	bronchial
17	chr9:18903000-18909400	Enhancers	Fetal Thymus	thymus
18	chr9:18903200-18904800	Weak transcription	HSMM	muscle
19	chr9:18903400-18904200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:18903400-18906600	Weak transcription	Fetal Muscle Leg	muscle

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