Variant report

Variant	rs35531900
Chromosome Location	chr12:104762584-104762585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10735396	0.86[ASN][1000 genomes]
rs11111949	1.00[EUR][1000 genomes]
rs11832165	1.00[EUR][1000 genomes]
rs11832923	1.00[EUR][1000 genomes]
rs11833441	1.00[EUR][1000 genomes]
rs12299988	1.00[EUR][1000 genomes]
rs12312443	1.00[EUR][1000 genomes]
rs12426717	1.00[AFR][1000 genomes]
rs35009941	1.00[EUR][1000 genomes]
rs35456434	1.00[EUR][1000 genomes]
rs41453549	1.00[EUR][1000 genomes]
rs60333117	1.00[EUR][1000 genomes]
rs61109788	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1046606	chr12:104606617-104763734	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1038609	chr12:104613847-104764981	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv541587	chr12:104613847-104764981	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104746200-104763000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:104749000-104762800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:104749000-104763200	Weak transcription	Primary T cells from cord blood	blood
4	chr12:104749000-104765800	Weak transcription	Thymus	Thymus
5	chr12:104749200-104763000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:104749200-104763400	Weak transcription	HUVEC	blood vessel
7	chr12:104749800-104769400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:104750400-104764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:104753800-104765400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:104754400-104764800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:104756200-104763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:104757600-104765000	Weak transcription	Aorta	Aorta
13	chr12:104761800-104762800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr12:104762000-104762800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:104762000-104762800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:104762000-104763200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:104762000-104765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:104762200-104763000	Strong transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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