Variant report

Variant	rs35533206
Chromosome Location	chr18:12881220-12881221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:12875420..12877466-chr18:12879544..12881307,2	MCF-7	breast:
2	chr18:12862494..12865307-chr18:12880258..12883236,3	MCF-7	breast:
3	chr18:12880282..12885478-chr18:12946145..12950206,8	K562	blood:
4	chr18:12833814..12836436-chr18:12879380..12882256,2	MCF-7	breast:
5	chr18:12880787..12883002-chr4:37479463..37481440,2	MCF-7	breast:
6	chr18:12880282..12884361-chr18:12946145..12949673,9	K562	blood:
7	chr18:12880723..12883598-chr18:12902234..12904693,2	K562	blood:
8	chr18:12712618..12714597-chr18:12880301..12882265,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000085415	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11874912	1.00[ASN][1000 genomes]
rs11875203	1.00[ASN][1000 genomes]
rs11876168	1.00[ASN][1000 genomes]
rs12964902	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2155734	1.00[ASN][1000 genomes]
rs34619612	1.00[ASN][1000 genomes]
rs56089701	1.00[ASN][1000 genomes]
rs56359953	1.00[ASN][1000 genomes]
rs72870545	1.00[ASN][1000 genomes]
rs9646473	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	nsv1064844	chr18:12748045-12953235	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
5	nsv543656	chr18:12748045-12953235	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
6	nsv909407	chr18:12877060-12917703	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12857800-12881600	Weak transcription	Fetal Stomach	stomach
2	chr18:12863400-12881400	Weak transcription	Right Atrium	heart
3	chr18:12863600-12882000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:12865000-12881800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr18:12865800-12883000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:12872400-12881600	Weak transcription	Ovary	ovary
7	chr18:12875600-12882800	Enhancers	Primary B cells from peripheral blood	blood
8	chr18:12875800-12882000	Weak transcription	HSMM	muscle
9	chr18:12876000-12882000	Weak transcription	Fetal Intestine Large	intestine
10	chr18:12877400-12881600	Weak transcription	Fetal Intestine Small	intestine
11	chr18:12877600-12881600	Weak transcription	Right Ventricle	heart
12	chr18:12877600-12882200	Weak transcription	Fetal Heart	heart
13	chr18:12877800-12882400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr18:12878000-12882600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr18:12878200-12882400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr18:12878400-12882000	Enhancers	HepG2	liver
17	chr18:12878600-12881400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr18:12878600-12882600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr18:12878600-12882600	Enhancers	Duodenum Mucosa	Duodenum
20	chr18:12878600-12882800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr18:12878600-12882800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr18:12878800-12882400	Flanking Active TSS	GM12878-XiMat	blood
23	chr18:12878800-12882600	Enhancers	Primary T cells from cord blood	blood
24	chr18:12878800-12882600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr18:12878800-12882600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr18:12878800-12882600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr18:12878800-12882800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr18:12879000-12881600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr18:12879000-12882600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr18:12879000-12882800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr18:12879200-12881400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:12879200-12881600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr18:12879200-12882000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr18:12879200-12882000	Enhancers	HMEC	breast
35	chr18:12879200-12882800	Enhancers	Liver	Liver
36	chr18:12879400-12881800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr18:12879400-12881800	Weak transcription	A549	lung
38	chr18:12879600-12881400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr18:12879600-12882000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr18:12879600-12882200	Weak transcription	Fetal Kidney	kidney
41	chr18:12879600-12882800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr18:12879600-12883200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr18:12879800-12881600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr18:12879800-12881800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr18:12879800-12881800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr18:12879800-12882200	Enhancers	Pancreas	Pancrea
47	chr18:12879800-12882400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr18:12879800-12882600	Enhancers	Primary hematopoietic stem cells	blood
49	chr18:12879800-12882800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr18:12879800-12882800	Enhancers	Skeletal Muscle Female	skeletal muscle

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