The 2.0 version of rSNPBase
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Variant report
Variant
rs35534643
Chromosome Location
chr8:85072064-85072065
allele
-/TT
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
FOS
chr8:85071806-85072157
HUVEC
blood vessel:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
TPM3P3
TF binding region
Extended variants information (count: 4 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv2753846
chr8:84637092-85239703
Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
8 gene(s)
inside rSNPs
diseases
2
nsv611646
chr8:85048690-85112377
Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNA
4 gene(s)
inside rSNPs
diseases
3
esv1767481
chr8:85072063-85072065
Inactive region
TF binding region
1 gene(s)
inside rSNPs
n/a
4
esv1989257
chr8:85072064-85072066
Inactive region
TF binding region
1 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links