Variant report

Variant	rs35535692
Chromosome Location	chr15:43544235-43544236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35975365	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35535692	ZSCAN29	cis	multi-tissue	Pritchard
rs35535692	TGM7	cis	Esophagus Mucosa	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43538000-43546600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr15:43541600-43544400	Enhancers	K562	blood
3	chr15:43542200-43546200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:43542600-43545800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:43542800-43545200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:43542800-43545200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:43542800-43545800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:43543200-43545000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:43543400-43544600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:43544000-43544400	Flanking Active TSS	GM12878-XiMat	blood
11	chr15:43544000-43545000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:43544000-43545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:43544200-43545600	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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